PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG016109.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NF-YB

Protein Properties

Length: 143aa MW: 16394.3 Da PI: 5.0721

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG016109.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	145.1	1.6e-45	5	99	3	97
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +qd++lPianv+r+mk+ lP a++sk+ak+ +qec++efisfvtseas+kc++e+rk++ngdd++wal++lGf+dy+++ yl+kyre+e++k CCG016109.1 5 KQDQLLPIANVGRVMKQRLPPTARVSKEAKQRMQECATEFISFVTSEASNKCRKENRKALNGDDVCWALSSLGFDDYADTTVRYLHKYREAERAK 99 79******************************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.1E-46	4	126	IPR009072	Histone-fold
SuperFamily	SSF47113	1.03E-36	6	122	IPR009072	Histone-fold
Pfam	PF00808	6.2E-23	9	73	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.1E-15	37	55	No hit	No description
PRINTS	PR00615	3.1E-15	56	74	No hit	No description
PRINTS	PR00615	3.1E-15	75	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MDDDKQDQLL PIANVGRVMK QRLPPTARVS KEAKQRMQEC ATEFISFVTS EASNKCRKEN 60 RKALNGDDVC WALSSLGFDD YADTTVRYLH KYREAERAKA DQKKATDTDK VNKDEESNDT 120 SCQAVQQQTD QIPEPTILEF RFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	4e-36	6	94	4	92	Transcription factor HapC (Eurofung)
4g92_B	4e-36	6	94	4	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011023652.1	1e-103	PREDICTED: nuclear transcription factor Y subunit B-4-like
Swissprot	O04027	2e-48	NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBL	B9I7Q2	3e-99	B9I7Q2_POPTR; Uncharacterized protein
STRING	POPTR_0013s02020.1	1e-100	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	7e-49	nuclear factor Y, subunit B4

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]