PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG015927.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 603aa MW: 65304.7 Da PI: 4.741

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG015927.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	445.5	3.5e-136	232	595	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 lv++Ll+cAea+++++l++a+al++r+ la+++ +m+++a++f+eALa+r+++ ++ y + ++s s++l + f+e++P+lkf+h+ a CCG015927.1 232 LVHALLACAEAIQQENLTRADALVKRIGLLAASQTGAMRKVATFFAEALARRIYKIFPQDY----CLDSS---CSDTLEM--HFYETCPYLKFAHFPA 320 689**************************************************444333....44444...5556555..5*********** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 NqaIlea+++++rvH+iDf+++qG+QWpaL+qaLa R++gpp +R+Tg+g+p+++++++l+++g++La++A+++gv+fef+ +va++l+dl+ e+L + CCG015927.1 321 NQAILEAFANASRVHVIDFGLKQGMQWPALMQALALRAGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAQTIGVEFEFRGFVANSLADLDAEMLGL 418 ********************************************************************************************** PP GRAS 197 kp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 p Ea+aVn+v++lhrll +++ +++ vL +k ++Pk+v++veqea+hn++ Fl+rf+eal+yys+lfdsle + + +++ ++++ +lgr CCG015927.1 419 LPpeVEAVAVNSVFELHRLLGRPGGIDK----VLGSIKAMRPKIVTIVEQEANHNGPVFLDRFTEALHYYSSLFDSLEGSGLTPPSQDLVMSELYLGR 512 998899**********88888888....*****************************************877666668999999** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +i+nvvacega+r+erhetl++Wr r+++aGF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+ CCG015927.1 513 HICNVVACEGADRVERHETLAQWRTRFDSAGFDPVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLMLGWHTRPLIATSAWQ 595 ********************************************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01129	1.7E-35	43	114	No hit	No description
Pfam	PF12041	3.3E-35	43	108	IPR021914	Transcriptional factor DELLA, N-terminal
PROSITE profile	PS50985	67.558	206	574	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-133	232	595	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence Send to blast
MKRDHQETIG GGIGNRAESS SSSMETGKGK SWVEDDQDAG GMDELLAVLG YKIKSSDMAG 60 VAQKLEQLEM VLGSEDGISH LASDTVHYNP SDLSGWVQSM LSEFNNLPST DLDSSILLSN 120 NRDSLLGQPS TITPLDFPSN SQSKVFADDS EYDLRAIPGV AAYPQQELDK SNDRKRMKLT 180 PIGSNIAPAP SVNSLQSPTS SSSPQAMAVS GTLSEPTRPV VLVDSQETGV CLVHALLACA 240 EAIQQENLTR ADALVKRIGL LAASQTGAMR KVATFFAEAL ARRIYKIFPQ DYCLDSSCSD 300 TLEMHFYETC PYLKFAHFPA NQAILEAFAN ASRVHVIDFG LKQGMQWPAL MQALALRAGG 360 PPAFRLTGIG PPQPDNTDAL QQVGWKLAQL AQTIGVEFEF RGFVANSLAD LDAEMLGLLP 420 PEVEAVAVNS VFELHRLLGR PGGIDKVLGS IKAMRPKIVT IVEQEANHNG PVFLDRFTEA 480 LHYYSSLFDS LEGSGLTPPS QDLVMSELYL GRHICNVVAC EGADRVERHE TLAQWRTRFD 540 SAGFDPVHLG SNAFKQASML LALFAGGDGY RVEENNGCLM LGWHTRPLIA TSAWQLAAGD 600 SQQ

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence Send to blast

MKRDHQETIG GGIGNRAESS SSSMETGKGK SWVEDDQDAG GMDELLAVLG YKIKSSDMAG  60
VAQKLEQLEM VLGSEDGISH LASDTVHYNP SDLSGWVQSM LSEFNNLPST DLDSSILLSN  120
NRDSLLGQPS TITPLDFPSN SQSKVFADDS EYDLRAIPGV AAYPQQELDK SNDRKRMKLT  180
PIGSNIAPAP SVNSLQSPTS SSSPQAMAVS GTLSEPTRPV VLVDSQETGV CLVHALLACA  240
EAIQQENLTR ADALVKRIGL LAASQTGAMR KVATFFAEAL ARRIYKIFPQ DYCLDSSCSD  300
TLEMHFYETC PYLKFAHFPA NQAILEAFAN ASRVHVIDFG LKQGMQWPAL MQALALRAGG  360
PPAFRLTGIG PPQPDNTDAL QQVGWKLAQL AQTIGVEFEF RGFVANSLAD LDAEMLGLLP  420
PEVEAVAVNS VFELHRLLGR PGGIDKVLGS IKAMRPKIVT IVEQEANHNG PVFLDRFTEA  480
LHYYSSLFDS LEGSGLTPPS QDLVMSELYL GRHICNVVAC EGADRVERHE TLAQWRTRFD  540
SAGFDPVHLG SNAFKQASML LALFAGGDGY RVEENNGCLM LGWHTRPLIA TSAWQLAAGD  600
SQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-64	239	594	26	378	Protein SCARECROW
5b3h_A	2e-64	216	594	2	377	Protein SCARECROW
5b3h_D	2e-64	216	594	2	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011002785.1	0.0	PREDICTED: DELLA protein GAI
Swissprot	Q84TQ7	0.0	GAI_GOSHI; DELLA protein GAI
TrEMBL	U5GFQ3	0.0	U5GFQ3_POPTR; Uncharacterized protein
STRING	POPTR_0004s08890.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF803	34	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	0.0	GRAS family protein