PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015911.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 298aa    MW: 35000.5 Da    PI: 8.0558
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015911.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix765.9e-2443125186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W  qe+++Li +r e+e+++  +k++++lWe vs+kmre+g+ +r+p+qCk+kw+nl   yk  ++++++    + ++cp+f++l+
  CCG015911.1  43 QWGLQETKELIGIRAELEKDFTVTKRNETLWEIVSAKMREKGYyRRTPEQCKCKWNNLVSLYKVKETSDSE----TGRQCPFFEELH 125
                  7*****************************************9788****************987777776....4678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.31736101IPR017877Myb-like domain
CDDcd122031.83E-2142108No hitNo description
PfamPF138372.2E-2142126No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MMFRSGGGEG DVGLGWINMM PTAAILSPTT EISPRGPPPQ HPQWGLQETK ELIGIRAELE  60
KDFTVTKRNE TLWEIVSAKM REKGYYRRTP EQCKCKWNNL VSLYKVKETS DSETGRQCPF  120
FEELHEVFTE RAKNMQRLLL ESEAGSTQSR KKVKRINGDR SSDELSEDVD EDESEEEKPA  180
RNNSRRRKGE KNVAEKSPRA SSSFGGVQEM LKEFFQQQQK MEMQWRELME KRAHEWQMLE  240
QEGRRSMDKL ERERLVIEQA WREREEQRRI REESRAKRRD ALLTALLKKL ASENAMQD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015753.10.0PREDICTED: trihelix transcription factor GT-3b-like
TrEMBLA0A2K2B4V51e-163A0A2K2B4V5_POPTR; Uncharacterized protein
STRINGPOPTR_0003s10360.11e-166(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17813385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.17e-32Trihelix family protein