PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG015866.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C3H | ||||||||
Protein Properties | Length: 112aa MW: 12360.9 Da PI: 4.581 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.5 | 4.1e-12 | 54 | 80 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p CCG015866.1 54 PGEPDCSYYIRTGLCRFGPTCRFNHPP 80 5799*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.84 | 53 | 81 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 53 | 80 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-8 | 55 | 80 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 58 | 81 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 59 | 79 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MDFDAGIPMS RGVGGLPAVT EETSLSPSLS EDAIWQMNLR SSETMEAGPY PERPGEPDCS 60 YYIRTGLCRF GPTCRFNHPP NRKLAIAAAR MKGEFPERIG QPECQGPEKL EE |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216470 | 4e-77 | AC216470.1 Populus trichocarpa clone POP037-N11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011015733.1 | 1e-73 | PREDICTED: zinc finger CCCH domain-containing protein 33-like isoform X1 | ||||
Swissprot | Q8GXX7 | 3e-45 | C3H33_ARATH; Zinc finger CCCH domain-containing protein 33 | ||||
TrEMBL | A0A2K1WQ17 | 1e-66 | A0A2K1WQ17_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s08040.1 | 8e-71 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19228 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 4e-43 | zinc finger protein 1 |
Publications ? help Back to Top | |||
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