PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015222.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 518aa    MW: 56986.7 Da    PI: 9.5827
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015222.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.11.6e-32239295360
                  -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  CCG015222.1 239 DGYNWRKYGQKQVKGSEYPRSYYKCTYPNCPVKKKVERSF-DGQIAEIVYKGEHNHSK 295
                  9***************************************.***************85 PP
2WRKY103.51.2e-32437494259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   Dg++WrKYGqK vkg+++prsYYrCts +C+v+k+ver ++dp+++++tYeg+Hnhe
  CCG015222.1 437 GDGFRWRKYGQKIVKGNPYPRSYYRCTSIKCNVRKHVERVSDDPRAFITTYEGKHNHE 494
                  5********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-29228296IPR003657WRKY domain
SuperFamilySSF1182901.57E-25236296IPR003657WRKY domain
SMARTSM007741.8E-36237295IPR003657WRKY domain
PfamPF031064.2E-25239293IPR003657WRKY domain
PROSITE profilePS5081123.617239296IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.3E-34421496IPR003657WRKY domain
SuperFamilySSF1182901.83E-28430496IPR003657WRKY domain
PROSITE profilePS5081134.853431496IPR003657WRKY domain
SMARTSM007741.6E-37436495IPR003657WRKY domain
PfamPF031061.3E-25438494IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MNVFCKLGSS KAYEMLMEKI PSFLMLRQPI SQIFIVLGRY LLKMEIKESE RVVIAKPVAS  60
RPSYSNFTSF SELLAGAINT TPSNVCSGTA VAAIRPKTVR FRPVVNRAPG ALVSSQAELS  120
GTAVSNSFNK VSGTDSKATI IYKPQAKLVS KATVSLLANM GNFNPNSQQM LQPVETRPPL  180
SKQDKHNFSS QLTSNLHQNI PSHAEADHAT EPLRLTSLNQ EEDPKTLSNA SNGDRPSYDG  240
YNWRKYGQKQ VKGSEYPRSY YKCTYPNCPV KKKVERSFDG QIAEIVYKGE HNHSKPQPPK  300
RNSSVTQGLS DGNASDRNST PLWSNQLNER NEGSEGREEN QNEIGLPVHS IYQGKAPPSY  360
DPAGTGTINA GTGTPDNSGG VSGECDGGSK GLEGATDEPK SKRRKTEIQS TEGGMSGEGV  420
QEPRVVVQSS TDSEILGDGF RWRKYGQKIV KGNPYPRSYY RCTSIKCNVR KHVERVSDDP  480
RAFITTYEGK HNHEMPLKIT NLAAFEPDSQ APTTRDKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-31239496877Probable WRKY transcription factor 4
2lex_A1e-31239496877Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1796080.0EF179608.1 (Populus tomentosa x P. bolleana) x P. tomentosa clone 01 WRKY transcription factor pseudogene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004128.10.0PREDICTED: WRKY transcription factor 44-like
RefseqXP_011004129.10.0PREDICTED: WRKY transcription factor 44-like
RefseqXP_011004130.10.0PREDICTED: WRKY transcription factor 44-like
RefseqXP_011004131.10.0PREDICTED: WRKY transcription factor 44-like
RefseqXP_011005037.10.0PREDICTED: WRKY transcription factor 44-like
RefseqXP_011005038.10.0PREDICTED: WRKY transcription factor 44-like
RefseqXP_011005039.10.0PREDICTED: WRKY transcription factor 44-like
RefseqXP_011005040.10.0PREDICTED: WRKY transcription factor 44-like
TrEMBLU5GAH70.0U5GAH7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s13550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-113WRKY family protein