PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG014579.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | EIL | ||||||||
Protein Properties | Length: 658aa MW: 74127.4 Da PI: 5.3463 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 512.2 | 2.4e-156 | 46 | 426 | 1 | 354 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkek 98 +el++rmw+d+mll+rlke+ k+ e+ ++ +k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd+Lr+WWkek CCG014579.1 46 DELERRMWRDRMLLRRLKEQGKN----TEV-VDHAKHRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRGWWKEK 138 79*****************9997....566.999**************************************************************** PP XXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.---- CS EIN3 99 vefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppyk 196 v+fdrngpaaiskyqa++ i+++++++ + s++h+l+elqDTtlgSLLsalmqhcdppqrrfplekgv+pPWWPt +e+ww++lgl+kdqg+ppyk CCG014579.1 139 VRFDRNGPAAISKYQADHSIPGKSEDCGP-AASTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVAPPWWPTANEEWWPQLGLPKDQGPPPYK 235 ***************************77.89****************************************************************** PP -GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XXXXXXXXXXXXXXXXXXXXXX.XXXXXX CS EIN3 197 kphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ssslrkqspkvtlsceqkedve.gkkesk 291 kphdlkkawkvsvLtavikh+sp+i++ir+l+rqsk+lqdkm+akes+++l+++nqee + ++++++ ++ + +s + ++s+++++dve +++e++ CCG014579.1 236 KPHDLKKAWKVSVLTAVIKHISPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEETLSRKLYPDscPPVSAGGSGSCVISDSSDYDVEgVDDEPN 333 *******************************************************************65446677****************7777777 PP .XXXXXXXXXX................................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXXX CS EIN3 292 ikhvqavktta................................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqney 354 +v+ +k+ + ++++++krk++ +e+ + +++v + c++ q++++++ l+f d ++++++++ CCG014579.1 334 -VEVEDCKRLDvnlfnmataagprdrfmmppaapqikgelvetSMDFIQKRKQPAGEPHMLVDQKV-YRCEHPQCPYNDSGLGFLDITARNNHQM 426 .55777777678************************************************999986.**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 3.8E-130 | 46 | 293 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 5.5E-75 | 168 | 303 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 7.72E-61 | 172 | 295 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 658 aa Download sequence Send to blast |
MGIFEEMGFC NNLDFFSAPG EMDAVPEREP GATIEEDYSD EEMDVDELER RMWRDRMLLR 60 RLKEQGKNTE VVDHAKHRQS QEQARRKKMS RAQDGILKYM LKMMEVCKAQ GFVYGIIPEK 120 GKPVSGASDN LRGWWKEKVR FDRNGPAAIS KYQADHSIPG KSEDCGPAAS TPHTLQELQD 180 TTLGSLLSAL MQHCDPPQRR FPLEKGVAPP WWPTANEEWW PQLGLPKDQG PPPYKKPHDL 240 KKAWKVSVLT AVIKHISPDI AKIRKLVRQS KCLQDKMTAK ESATWLAIIN QEETLSRKLY 300 PDSCPPVSAG GSGSCVISDS SDYDVEGVDD EPNVEVEDCK RLDVNLFNMA TAAGPRDRFM 360 MPPAAPQIKG ELVETSMDFI QKRKQPAGEP HMLVDQKVYR CEHPQCPYND SGLGFLDITA 420 RNNHQMNCLY RTNASQGLGL SNFQINSDKP AVFSLPFPQT KAAAPNQTPS FNVSGLGLPE 480 DGKKSISDLM SFYDTNLQRD KNMNPGSANV IGDQNQQQLQ EQKFQFQLNP RNVNFMGDQN 540 PQQQQKFQFQ LDPRNANIIG GQNQQQQQKF QFQLDDSFYG QGAMAGNNIT EATSMPVNNA 600 VFSSTENQFD HCKAFDSAFD TNVSDNITDF RFGSPFPSPP VDYSMDLIPK QDVGMWYV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4zds_A | 7e-82 | 170 | 303 | 1 | 134 | Protein ETHYLENE INSENSITIVE 3 |
4zds_B | 7e-82 | 170 | 303 | 1 | 134 | Protein ETHYLENE INSENSITIVE 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor acting as a positive regulator in the ethylene response pathway. Is required for ethylene responsiveness in adult plant tissues. Binds a primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter with consequence to activate the transcription of this gene. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU225435 | 0.0 | CU225435.1 Populus EST from leave. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011046481.1 | 0.0 | PREDICTED: ETHYLENE INSENSITIVE 3-like 1 protein | ||||
Refseq | XP_011046482.1 | 0.0 | PREDICTED: ETHYLENE INSENSITIVE 3-like 1 protein | ||||
Swissprot | O24606 | 0.0 | EIN3_ARATH; Protein ETHYLENE INSENSITIVE 3 | ||||
TrEMBL | A0A2K1YZT0 | 0.0 | A0A2K1YZT0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s25370.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF322 | 34 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20770.1 | 0.0 | EIL family protein |