PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014440.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 376aa    MW: 39873.7 Da    PI: 6.9706
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014440.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-0891116127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +kt+lC+ f++ GtC+y  +C+FaH++
  CCG014440.1  91 FKTKLCCKFRA-GTCPYITNCNFAHSM 116
                  69*********.*************95 PP
2zf-CCCH18.92.6e-06167188526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C+ f+    C+yGd+C+F H+
  CCG014440.1 167 HCKKFYTEEGCPYGDNCTFLHD 188
                  599999999************7 PP
3zf-CCCH42.98e-14256281126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt++C+ +  tG+C++G++C+FaHg
  CCG014440.1 256 WKTRICNKWELTGYCPFGNKCHFAHG 281
                  8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.24E-788121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-1388123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.62490117IPR000571Zinc finger, CCCH-type
SMARTSM003560.001590116IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-591115IPR000571Zinc finger, CCCH-type
SMARTSM003560.17162189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732162190IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-7163190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-8163190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-17251285IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-10252286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.981255283IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-9255282IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-11256281IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDYNRDFSGG NVIPITGPDS WISNSSDSNS VWATEDDYRF WNNSDGLNDN TPSNSNYQSS  60
ETLSGSEPPN KKSKNNSQEL NSKKSIGKMF FKTKLCCKFR AGTCPYITNC NFAHSMEELR  120
RPPPNWQEIV AAHEEEKGNT VDAREEFQIP SIVGFGAETQ RSSKGRHCKK FYTEEGCPYG  180
DNCTFLHDEQ SKNRESVAIS LGPGGYGGGG GGGGGGGGGG GGGGGGVGGG GGGGGGGGGG  240
GGNAGSNAVN VKPSNWKTRI CNKWELTGYC PFGNKCHFAH GVGELHRYGG GLVEMDAKDS  300
AFVPVESKQG GVPSKNPPET VVASVTSVPN SDVYHLGVPS QKSSILIQRP GQRTHQKWKG  360
PDKISRIYGD WIDDIE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018542.10.0PREDICTED: zinc finger CCCH domain-containing protein 12 isoform X1
SwissprotQ84UQ31e-123C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLU5GRB70.0U5GRB7_POPTR; Uncharacterized protein
STRINGPOPTR_0001s02330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-121C3H family protein