PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG014412.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HD-ZIP

Protein Properties

Length: 804aa MW: 89200.1 Da PI: 5.4086

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG014412.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.7	6.2e-21	87	142	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++eLe++F+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k CCG014412.1 87 KKRYHRHTARQIQELEAMFKECPHPDDKQRMRLSHELGLKPRQVKFWFQNRRTQMK 142 688899***********************************************998 PP
2	START	147.7	1e-46	285	509	2	206
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 la++ ++elvk+ a+ep+W + +ng+evl +e ++ ++ea r+++vv+m++ +lv +ld + +W ++ +a+t+ CCG014412.1 285 LALSSMDELVKMCHANEPLWITNN--KNGKEVLNLEEHARMfpwpynikqnsndMRTEATRDCAVVIMNSINLVDAFLDAN-KWMDLFPtivaRAKTV 379 57899***************99..******99888********99**********************.88888887888* PP EEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS START 83 evissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173 i++g g l+lm+aelq+lsplvp R+ +f+R+++q ++g+w+ivd +ds ++ +s+ +++pSg++i++++ng+s++tw+eh++ + CCG014412.1 380 RGIKTGvcgasGSLHLMYAELQVLSPLVPtRETYFLRFCQQnVEEGTWAIVDFPLDSFHDNI-RPSFPLYRRRPSGCVIQDLPNGYSRLTWIEHAEIE 476 *************************************99**********99998.56666666*********************** PP SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 174 grlphwllrslvksglaegaktwvatlqrqcek 206 ++ +h+++ + v sg+a+ga +w+ lqrqce+ CCG014412.1 477 DKPVHQIFSQYVYSGMAFGAHRWLTVLQRQCER 509 *****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.45E-20	77	145	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.1E-23	81	152	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.378	84	144	IPR001356	Homeobox domain
SMART	SM00389	3.7E-20	85	148	IPR001356	Homeobox domain
CDD	cd00086	1.70E-19	87	145	No hit	No description
Pfam	PF00046	1.8E-18	87	142	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	119	142	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	40.335	275	512	IPR002913	START domain
CDD	cd08875	5.38E-107	281	508	No hit	No description
SuperFamily	SSF55961	7.0E-28	282	511	No hit	No description
SMART	SM00234	5.8E-26	284	509	IPR002913	START domain
Pfam	PF01852	2.0E-39	286	509	IPR002913	START domain
SuperFamily	SSF55961	1.51E-12	527	765	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 804 aa Download sequence Send to blast
MFGDCQVMSN MGGNVVSSDT IYSLPIENPS FNFMSSMPFH TLSPIISKEE NGLVMPGKEE 60 VESGSGCEQL EEKSGNEEES SERPPKKKRY HRHTARQIQE LEAMFKECPH PDDKQRMRLS 120 HELGLKPRQV KFWFQNRRTQ MKAQQDRSDN NILRAENESL QNDNYRLQAE LRNLMCPDCG 180 GQAMLGEIPF EELRLEHARL VEELERVCCF ASRYGGRPIH SMVPAPAFVP PSLDLDMSIY 240 SRPFPESLGT CTDMMPMPML PEPSSFPEAG IVLMEEGEGG LAMGLALSSM DELVKMCHAN 300 EPLWITNNKN GKEVLNLEEH ARMFPWPYNI KQNSNDMRTE ATRDCAVVIM NSINLVDAFL 360 DANKWMDLFP TIVARAKTVR GIKTGVCGAS GSLHLMYAEL QVLSPLVPTR ETYFLRFCQQ 420 NVEEGTWAIV DFPLDSFHDN IRPSFPLYRR RPSGCVIQDL PNGYSRLTWI EHAEIEDKPV 480 HQIFSQYVYS GMAFGAHRWL TVLQRQCERV ASLMARNISD LGVIPSPEAR KNMMRLAQRM 540 IRTFSLNIST SSGQSWTALP DSHDGTVRII SREITEPGQP NGVILSAVST TWLPYHHFLV 600 FDLLRDEHRR SQLEVLSNGN ALHEVAHIAN GSHPGNCISL LRINVASNSS QHVDLMLQES 660 CTDQSGGLVV FTTVDVESIQ LAMSGEDPSC IPLLPLGFVI VPVESSSSNV SEGNSVQSNS 720 EDGNGNGHNN SGCLLTVGLQ ALASTISSAK LNISSVTAIN NHLCNTVNQI TVALSNTATT 780 TSSCLDNGNA VGSCNEPTAA PKQV

Sequence ? help Back to Top

Protein Sequence Length: 804 aa Download sequence Send to blast

MFGDCQVMSN MGGNVVSSDT IYSLPIENPS FNFMSSMPFH TLSPIISKEE NGLVMPGKEE  60
VESGSGCEQL EEKSGNEEES SERPPKKKRY HRHTARQIQE LEAMFKECPH PDDKQRMRLS  120
HELGLKPRQV KFWFQNRRTQ MKAQQDRSDN NILRAENESL QNDNYRLQAE LRNLMCPDCG  180
GQAMLGEIPF EELRLEHARL VEELERVCCF ASRYGGRPIH SMVPAPAFVP PSLDLDMSIY  240
SRPFPESLGT CTDMMPMPML PEPSSFPEAG IVLMEEGEGG LAMGLALSSM DELVKMCHAN  300
EPLWITNNKN GKEVLNLEEH ARMFPWPYNI KQNSNDMRTE ATRDCAVVIM NSINLVDAFL  360
DANKWMDLFP TIVARAKTVR GIKTGVCGAS GSLHLMYAEL QVLSPLVPTR ETYFLRFCQQ  420
NVEEGTWAIV DFPLDSFHDN IRPSFPLYRR RPSGCVIQDL PNGYSRLTWI EHAEIEDKPV  480
HQIFSQYVYS GMAFGAHRWL TVLQRQCERV ASLMARNISD LGVIPSPEAR KNMMRLAQRM  540
IRTFSLNIST SSGQSWTALP DSHDGTVRII SREITEPGQP NGVILSAVST TWLPYHHFLV  600
FDLLRDEHRR SQLEVLSNGN ALHEVAHIAN GSHPGNCISL LRINVASNSS QHVDLMLQES  660
CTDQSGGLVV FTTVDVESIQ LAMSGEDPSC IPLLPLGFVI VPVESSSSNV SEGNSVQSNS  720
EDGNGNGHNN SGCLLTVGLQ ALASTISSAK LNISSVTAIN NHLCNTVNQI TVALSNTATT  780
TSSCLDNGNA VGSCNEPTAA PKQV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU129183	2e-55	GU129183.1 Populus balsamifera transcription factor HEX (OCLHD) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011018502.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5-like isoform X1
Swissprot	Q9FJS2	0.0	HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBL	A0A2K2BX62	0.0	A0A2K2BX62_POPTR; Uncharacterized protein
STRING	POPTR_0001s02030.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10946	30	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lung SC, et al. Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors. New Phytol., 2018. 218(1): p. 183-200 [PMID:29288621]