PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG014198.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C3H | ||||||||
Protein Properties | Length: 93aa MW: 10588 Da PI: 7.2881 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.2 | 2.4e-12 | 35 | 60 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p CCG014198.1 35 GEPDCSYYIRTGLCRFGATCRFNHPP 60 6899********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.23 | 33 | 61 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-5 | 33 | 60 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.9E-9 | 35 | 60 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 38 | 61 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.6E-5 | 39 | 59 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MFELSHPVSF SDAMWQMNLR SSETMEAGPY PERSGEPDCS YYIRTGLCRF GATCRFNHPP 60 NRKLAIAAAR MKGEFPERIG QPECQVYSVS TVY |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216470 | 4e-64 | AC216470.1 Populus trichocarpa clone POP037-N11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011014133.1 | 4e-48 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like | ||||
Refseq | XP_011015733.1 | 6e-49 | PREDICTED: zinc finger CCCH domain-containing protein 33-like isoform X1 | ||||
Refseq | XP_011015734.1 | 3e-49 | PREDICTED: zinc finger CCCH domain-containing protein 33-like isoform X2 | ||||
Refseq | XP_024439444.1 | 4e-48 | zinc finger CCCH domain-containing protein ZFN-like isoform X4 | ||||
Swissprot | Q9SWF9 | 2e-45 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A2K1Y346 | 6e-46 | A0A2K1Y346_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A3N7FZN1 | 9e-48 | A0A3N7FZN1_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A3N7GS95 | 9e-47 | A0A3N7GS95_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s08490.1 | 2e-48 | (Populus trichocarpa) | ||||
STRING | POPTR_0019s08040.1 | 2e-49 | (Populus trichocarpa) | ||||
STRING | XP_008355849.1 | 1e-46 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF22451 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-42 | zinc finger protein 1 |