PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014197.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 271aa    MW: 29042.7 Da    PI: 8.6414
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014197.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.71.6e-12132158127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+f+++tG Ck+G+ C+F+H++
  CCG014197.1 132 PGQPECQFYMKTGDCKFGAVCRFHHPR 158
                  5789*********************96 PP
2zf-CCCH413.2e-13178204127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++lC f++r+G+Ck+G++CkF H++
  CCG014197.1 178 PGEPLCIFYSRYGICKFGPSCKFDHPM 204
                  589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.8E-6131158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596131159IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-9133158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6135161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5137159IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7177204IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709177205IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10179204IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-6180204IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4182202IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MMVPLRGSPI YPTVSSPTTP GQQSYPGGLA TTWSRASFIT SPRWQAPSSY TPLILPQGVV  60
SVPGWNAYSG QLGSVSSPEN QQQTGNSQIY GTSRHSESVN AGSQGTFSPY RSGSAPLGYY  120
ALQRESVFPE RPGQPECQFY MKTGDCKFGA VCRFHHPRER LIPAPDCVLS PIGLPLRPGE  180
PLCIFYSRYG ICKFGPSCKF DHPMGIFTYN LTASSSADAP VRRLLGSSSG SAGLTLSSEG  240
LVEAGPTKPR RLSLSEPRQM PPGDDNIDTG G
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2263381e-149CU226338.1 Populus EST from severe drought-stressed leaves.
GenBankCU2268051e-149CU226805.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014133.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
RefseqXP_011015459.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF91e-142ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2K1Y3460.0A0A2K1Y346_POPTR; Uncharacterized protein
STRINGPOPTR_0019s08030.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-89zinc finger protein 1