PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014017.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 186aa    MW: 20993.3 Da    PI: 7.196
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014017.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.8e-101862554
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 +  +ErrRR+++ +++ +Lr l+P       + ++K +i e A+ YI++L
  CCG014017.1 18 NLHAERRRREKLSNRLLTLRALVPII-----TNMNKGTIIEDAITYIQEL 62
                 5579*********************6.....58***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.9031362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-141478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-141580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-101567No hitNo description
PfamPF000102.0E-71762IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-101968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MGRKRASYDD TVGYKSKNLH AERRRREKLS NRLLTLRALV PIITNMNKGT IIEDAITYIQ  60
ELKKNVESLT DMLQEMEASS SEEEFKTKVN EIDASEEMKQ CGIKEDVQVT NIEGDKLWIK  120
IILEKKRGGF ARLMEKMACF GLELIDSNVT TSKGAMLVTA CVEGAFGDTL TVQQTKELLT  180
QIIKGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12126ERRRRE
22227RRRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003414.11e-132PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1
TrEMBLA0A2K2AP271e-120A0A2K2AP27_POPTR; Uncharacterized protein
STRINGPOPTR_0004s02920.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.12e-49bHLH family protein