PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG013483.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 711aa    MW: 79913.1 Da    PI: 8.1167
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG013483.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.8e-1814102192
                  EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  ffkv    + ++s++l+lp  f  ++ g++++ +k  tl+d + + W+v l   k+ g  v+++GWkeF+  + L +gDf++Fk+dg+sefe 
  CCG013483.1  14 FFKVY--LSDFSSRQLSLPPAFGVQFnGKNEALPKNATLKDGNAKIWQVGL--VKREGDWVIKDGWKEFACYHSLVDGDFLIFKYDGSSEFEV 102
                  77877..88899999*******777779999********************..9999999**************************9999954 PP
2B337.25.2e-122132771784
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                  ++pkkf++e++++    k+++l+desg+ W v+ + + ++  +vl++G +eF++ n+L    +++  l
  CCG013483.1 213 RIPKKFLRENNIE--LLKEIKLRDESGKLWPVQTSLWDSG-YTVLSSGFSEFCRMNKLGRLSTCTAFL 277
                  7*********866..788****************999886.779***************999998555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.94312108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-1813108IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-1713108IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-1514108IPR003340B3 DNA binding domain
PfamPF023621.5E-1614102IPR003340B3 DNA binding domain
CDDcd100172.40E-1614105No hitNo description
SuperFamilySSF1019368.04E-13197286IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.7E-14197286IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.234197292IPR003340B3 DNA binding domain
SMARTSM010193.8E-6201291IPR003340B3 DNA binding domain
PfamPF023621.0E-9213274IPR003340B3 DNA binding domain
CDDcd100171.27E-8213267No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MVKPKRNVSF SNEFFKVYLS DFSSRQLSLP PAFGVQFNGK NEALPKNATL KDGNAKIWQV  60
GLVKREGDWV IKDGWKEFAC YHSLVDGDFL IFKYDGSSEF EVELYGNNGL KNNGLKKEGR  120
GLENKPSIHV KEEQETEEDF IGSRPISGCK QKDSNIEPRI TRSQGLFGKS GPKSSETKIA  180
KLGECKGAKA PSSVPREVPR FVLNITQITR FARIPKKFLR ENNIELLKEI KLRDESGKLW  240
PVQTSLWDSG YTVLSSGFSE FCRMNKLGRL STCTAFLVKG KHFLVEEYFS SKVVEHLDGT  300
WSCVRGACTV VRDFADFSFH SYFSVMDELL ESKGEEPIEL KVAQIPGCIL AAILGIVVDV  360
HVITIIVLLK APLMLLKGWH RLIQDLIGRE GPFLETVCVP FAALWILLWP IMVLLAIAAG  420
IISSLGFGCF AAVVAYQENS TKRGLLYVVA SASIFDEYTN DLLYLQEGSC FPRPRYRKGA  480
TSSSSLLPVK GLHERFEAAY VGEQLVTTTT DKATSLKAAM IWDSFFKTFE DIGKELLRMG  540
AIGMPDLDAW ADSKSKIIDN GIPAYAFLEC FLRSFKHGSY GLILRDKVEI TRLNRPEGRI  600
FDWLYEPMCI MKEQISSLKL DESEELYFYK HCLYGGDEKR IKSWLNGGTP PSDEIKRAQL  660
EGISRRLQGF CLTLSRLPTS RRRFCEVAKA IEEEAKNSSI LASGDDLEAA R
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039259.10.0PREDICTED: uncharacterized membrane protein At3g27390-like
TrEMBLB9HEF80.0B9HEF8_POPTR; Uncharacterized protein
STRINGPOPTR_0007s11900.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.16e-19B3 family protein