PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG013143.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 403aa    MW: 45063.8 Da    PI: 8.2257
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG013143.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.4e-07230252123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C+ Cgk F+r  nL+ H+r H
  CCG013143.1 230 HYCQVCGKGFKRDANLRMHMRAH 252
                  68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.82E-6228256No hitNo description
PROSITE profilePS5015712.653230257IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-6230256IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034230252IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280232252IPR007087Zinc finger, C2H2
SMARTSM0035590287320IPR015880Zinc finger, C2H2-like
SMARTSM0035522325347IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MISGDSSCFP SGSSQGFHMY QAVTEDVVSS TREASSSSET HSNSLLCNLS LLKDKVHQVE  60
SLISILIAPD HSQPEDKSTS VALANMSTMI QEIIVAASSV MFTCQQMGIG NDISGNINTN  120
DLHQPRGCKA EESSLLSQPN FGGHHAGNIG EERGQSFFSP ESFNWCSDNY NDNCNTNENI  180
RGIHVSSNNR VDIRREILSQ GGEGILQGQS PKNYDIIELD AADLLAKYTH YCQVCGKGFK  240
RDANLRMHMR AHGDEYKTTA ALSNPMKNNP TATPENKEAS MKLPRKYSCP HEGCRWNRKH  300
AKFQPLKSMI CVKNHYKRSH CPKMYVCKRC NRKQFSVLSD LRTHEKHCGD LKWLCSCGTT  360
FSRKDKLMGH VALFFGHTPA ISGLTRPKKF ENQAMQMHLD HDR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015259.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
SwissprotQ0WT241e-110STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLU5GGZ90.0U5GGZ9_POPTR; Uncharacterized protein
STRINGPOPTR_0004s22670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-106C2H2 family protein