PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG013099.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 214aa MW: 24241.3 Da PI: 8.4622 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.6 | 1.3e-09 | 24 | 74 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + +++Er+RR++++s +++L +llP+ + ++ + +A++YIksL+ CCG013099.1 24 TERKIVERNRRNQMKSLYSNLNSLLPNrN---FKEAQPLPDQIDRAINYIKSLE 74 66789**********************55...677799999***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.54E-12 | 21 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.887 | 21 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-11 | 23 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.51E-5 | 23 | 78 | No hit | No description |
Pfam | PF00010 | 8.4E-6 | 24 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.5E-4 | 27 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MVAKTGGTIM QSRSSRSNIS STKTERKIVE RNRRNQMKSL YSNLNSLLPN RNFKEAQPLP 60 DQIDRAINYI KSLEEKLEKA REKKESLRSR KRSYTCTFDP ISSAASKSPQ LKIHEIGSAL 120 EIVLTSGLDN QFLFYEIISI LHEEGVEVVS ANFQALGDSL FHIVHAQMKG SADGFGAARV 180 TERLNRFISG STSEIELDSE LWDFANHPET NWEF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002885.1 | 1e-158 | PREDICTED: transcription factor bHLH118-like isoform X4 | ||||
TrEMBL | U5FEU0 | 1e-140 | U5FEU0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s13090.1 | 1e-140 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF906 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 1e-17 | bHLH family protein |