PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012889.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 240aa    MW: 26993 Da    PI: 7.2483
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012889.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.93.3e-3819115197
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  aCaaCk++r++C++dC+lapyfpae++++f++vhk+FG+snv+kl+k+++ee+r+++++slv+eA++r++dPv G++g +++l+++l+  k++  +l
  CCG012889.1  19 ACAACKHQRKRCTEDCALAPYFPAEKTQEFQAVHKVFGVSNVVKLVKDVSEERRKETADSLVWEAQCRQNDPVLGCYGKFKRLKEELDLYKSQHPSL 115
                  7**************************************************************************************9999886555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.38718119IPR004883Lateral organ boundaries, LOB
PfamPF031955.7E-3719112IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MQRENNSNNN NNRTLFHPAC AACKHQRKRC TEDCALAPYF PAEKTQEFQA VHKVFGVSNV  60
VKLVKDVSEE RRKETADSLV WEAQCRQNDP VLGCYGKFKR LKEELDLYKS QHPSLNQNQN  120
GQQQGGVVYN KQSPVMVYGI NDRANGIGGG GLAANNNMVS YGHDNENLIA DSIQHNFHWD  180
YVQSLDKSKR GRDASSLLLP SPQPLPHHYS INGFNQQQYY LPGEFGSMES TLFMGEGDGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-232012512121LOB family transfactor Ramosa2.1
5ly0_B2e-232012512121LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002684.10.0PREDICTED: LOB domain-containing protein 2-like
SwissprotQ9LNB93e-41LBD2_ARATH; LOB domain-containing protein 2
TrEMBLA0A3N7HDC41e-143A0A3N7HDC4_POPTR; Uncharacterized protein
STRINGPOPTR_0019s12200.11e-132(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127222534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-42LOB domain-containing protein 2