PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG012855.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 305aa MW: 34000.8 Da PI: 7.733

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG012855.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	113	1.4e-35	45	102	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + lkcprCdstntkfCyynny+ sqPr+fCk+C+r+WtkGG lrnvPvGggr++++++ CCG012855.1 45 EPLKCPRCDSTNTKFCYYNNYNKSQPRHFCKTCKRHWTKGGNLRNVPVGGGRKNKRQK 102 5789***********************************************8777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-22	45	100	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.5E-31	46	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.484	47	101	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	49	85	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MGLSSKQVTG DGLDWSQTLL QAHTLELPKP PVIRRQQQQN QLQFEPLKCP RCDSTNTKFC 60 YYNNYNKSQP RHFCKTCKRH WTKGGNLRNV PVGGGRKNKR QKTSKTSSKT TTSSSTTEST 120 TAPSNNNCAT NMTNWVNPQL AIEAQQQRQN LPDLVLGGQK DLSEILYQAM INPPSSVLQQ 180 NLISCNNLDT KSFNINNNVV LLGSSVSIPQ NQGLLFPYSS SFDTHPSSIC TSFQPSNVYN 240 HNGESMEDST ITTIMPPASS TIAHSLQVPN TSSGMDMTNY WNWDDIENYV SADLSEPWDD 300 SEIKP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011047842.1	0.0	PREDICTED: dof zinc finger protein DOF1.1-like
TrEMBL	B9HYL3	0.0	B9HYL3_POPTR; Uncharacterized protein
STRING	POPTR_0011s04730.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	5e-29	DOF zinc finger protein 1