PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG012790.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WOX

Protein Properties

Length: 387aa MW: 44043.7 Da PI: 5.4483

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG012790.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.8	2.8e-21	85	144	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+ps++++++++++l +++ ++V++WFqN++a+e++ CCG012790.1 85 SRWNPTPEQLRTLEELYRRgTRTPSTDQIQDITAQLrrygRIEGKNVFYWFQNHKARERQ 144 7***************99************************************97 PP
2	Wus_type_Homeobox	115.2	3.3e-37	84	146	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++++iq+ita+L++yG+ie+kNVfyWFQN+kaRerqk+ CCG012790.1 84 SSRWNPTPEQLRTLEELYRRGTRTPSTDQIQDITAQLRRYGRIEGKNVFYWFQNHKARERQKR 146 79***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	2.4E-5	82	149	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.0E-8	85	144	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.28E-12	85	150	IPR009057	Homeodomain-like
Pfam	PF00046	5.9E-19	85	144	IPR001356	Homeobox domain
CDD	cd00086	2.11E-6	86	146	No hit	No description
PROSITE profile	PS50071	11.046	90	145	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MWMMGYNDSG DFDMPDSFND RKLKTLVPRP LPSTNNTSPA SGYPCPGSRL HSTDFLALNQ 60 YHLGLASMVD QSIRDFNTQP VVMSSRWNPT PEQLRTLEEL YRRGTRTPST DQIQDITAQL 120 RRYGRIEGKN VFYWFQNHKA RERQKRRRQM ESDSLDDHQQ NGQGVEMFER KEPGASMTGY 180 EGEQTRNWAP STNCSTLSEE SVSISKATKA AMAEYYRPDG WIEFDEGEIL QHRRNLIERN 240 ATWEMTPFSC PSPTHLLNTI SSAPATTIAT TTASTQGAAT VRTMDPTKLM NAHDLNIFIA 300 PYIENGHHGA RFNHFNNSLI NEGDEYCRDG NDESQTLQLF PLRSGGNGNN IERINERETE 360 VSVSAADTWN ANDFSPCQFF EFLPLKI

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MWMMGYNDSG DFDMPDSFND RKLKTLVPRP LPSTNNTSPA SGYPCPGSRL HSTDFLALNQ  60
YHLGLASMVD QSIRDFNTQP VVMSSRWNPT PEQLRTLEEL YRRGTRTPST DQIQDITAQL  120
RRYGRIEGKN VFYWFQNHKA RERQKRRRQM ESDSLDDHQQ NGQGVEMFER KEPGASMTGY  180
EGEQTRNWAP STNCSTLSEE SVSISKATKA AMAEYYRPDG WIEFDEGEIL QHRRNLIERN  240
ATWEMTPFSC PSPTHLLNTI SSAPATTIAT TTASTQGAAT VRTMDPTKLM NAHDLNIFIA  300
PYIENGHHGA RFNHFNNSLI NEGDEYCRDG NDESQTLQLF PLRSGGNGNN IERINERETE  360
VSVSAADTWN ANDFSPCQFF EFLPLKI

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF982699	0.0	KF982699.1 Populus tomentosa WOX1a (WOX1a) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011039127.1	0.0	PREDICTED: WUSCHEL-related homeobox 1-like
TrEMBL	A0A2K1Y906	0.0	A0A2K1Y906_POPTR; Uncharacterized protein
STRING	POPTR_0012s04510.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2892	34	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	6e-51	WUSCHEL related homeobox 1