PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012694.5
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 630aa    MW: 70514.2 Da    PI: 4.6277
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012694.5genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.77.7e-52101371128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  l+pGfrFhPtdeelv +yLk+kv++k+++l ++i+ +d+yk+ePwdLp k k+k+++ ewyfFs  dkky +g ++nrat++gyWk+tgkd++++  +
  CCG012694.5  10 LAPGFRFHPTDEELVRYYLKRKVTNKPFRL-DAISVTDVYKSEPWDLPvKsKLKSRDLEWYFFSMLDKKYGNGAKTNRATEKGYWKTTGKDRPIHW-N 105
                  579***************************.99***************5347777777*************************************9.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++vg+kktLv+++grap+ge+++Wvmheyrl
  CCG012694.5 106 SRVVGMKKTLVYHQGRAPRGERSNWVMHEYRL 137
                  99****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-608160IPR003441NAC domain
PROSITE profilePS5100557.38810160IPR003441NAC domain
PfamPF023651.3E-2712137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MGSSDSATSL APGFRFHPTD EELVRYYLKR KVTNKPFRLD AISVTDVYKS EPWDLPVKSK  60
LKSRDLEWYF FSMLDKKYGN GAKTNRATEK GYWKTTGKDR PIHWNSRVVG MKKTLVYHQG  120
RAPRGERSNW VMHEYRLADE ELDKAGIAQD AFVLCRIFQK SGTGPKNGEQ YGAPFIEEEW  180
EDDELPLLPS EEMVPAGEAP VGDGSYLELN ELDQLLLPPD NFQGVFLEVQ SSLQAPEKKE  240
LHSVSPRIFL VISYSVQLQT NIWGQYVIRC YALFLHRASF LIRLTVNFDS GITSENTALP  300
LNFYYGETSN YVEQPSNFSD NDIKPVIRGA ENRNCPAPPA DQNLDLPGQY ELHADKKEHN  360
AEPIINIVNA INANYLFDES YLDALDDLPQ SEGFFLEAND LSKPVELETG GDSSDFNMVD  420
EYLNFFDAVD ENLSFDPSDI LGSETAVSDQ QLPPQEDVKG RTEELSTASQ NLLETHGTID  480
PSSSKQKPEG MKFDSGADFK YPFIKQASHR LGNIPAPPAL ASEFPSKDAA LRLHPASSSS  540
INVTAGMIRI ENMSLGGNEM QWSFGKNGNV NIILSFGLPQ QGGPASLVPM NSLFLGKTES  600
VVSRGWLYLM FFWVLILSVS YKFGTCICAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-4341609168Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2246300.0CU224630.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011024333.10.0PREDICTED: NAC domain-containing protein 78-like isoform X1
TrEMBLA0A2I4KK980.0A0A2I4KK98_POPTR; NAC family protein
STRINGPOPTR_0010s23650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53473247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-104NAC domain containing protein 2