PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG012125.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

VOZ

Protein Properties

Length: 442aa MW: 49048 Da PI: 5.9192

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG012125.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	293.3	2.3e-90	255	400	72	217
VOZ 72 gkevgipecegaatakspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhl 169 +k+vgip+cegaa +kspwnaaelfdlsll+getirewlffdkprraf+sgnrkqrslpdysgrgwhesrkqvmke+gg+k+syymdpqp++++ewhl CCG012125.2 255 SKNVGIPQCEGAAVMKSPWNAAELFDLSLLDGETIREWLFFDKPRRAFDSGNRKQRSLPDYSGRGWHESRKQVMKELGGQKKSYYMDPQPAGCHEWHL 352 69********************************************************************************************** PP VOZ 170 yeyeineldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 +eyein++d +alyrlelkl+++kks kgkv kd+ladlqkk+grlta CCG012125.2 353 FEYEINNCDLCALYRLELKLANGKKSLKGKVPKDPLADLQKKMGRLTA 400 ********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MQKGKKSKCT SRSHHLLMDN AKARLNDLLE RFSNLQAARK EGWNSDVAVL EEQVYQGLRE 60 WKAELDVPSP ANSLLDISLG SFSDDIGRLL QLYEEEDDAT SPLTMQSVLK PEMQPEPNFH 120 NLNSGNLTTF QHEYLVNSHG QGLGFQGFHQ PNSSASGLQN VVVSAPDTTT LLDCQQCTLH 180 EEFDPGLFGG TNDIEERGKN AESNNLQYIS PPPSAFMGPK CALWDCTRPA QGSEWCKDYC 240 SSFHATLALN EGPPSKNVGI PQCEGAAVMK SPWNAAELFD LSLLDGETIR EWLFFDKPRR 300 AFDSGNRKQR SLPDYSGRGW HESRKQVMKE LGGQKKSYYM DPQPAGCHEW HLFEYEINNC 360 DLCALYRLEL KLANGKKSLK GKVPKDPLAD LQKKMGRLTA VVTSGNGPTL EGKERLIEKT 420 DSGDVNCAHD HKTSGTGMGP GP

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MQKGKKSKCT SRSHHLLMDN AKARLNDLLE RFSNLQAARK EGWNSDVAVL EEQVYQGLRE  60
WKAELDVPSP ANSLLDISLG SFSDDIGRLL QLYEEEDDAT SPLTMQSVLK PEMQPEPNFH  120
NLNSGNLTTF QHEYLVNSHG QGLGFQGFHQ PNSSASGLQN VVVSAPDTTT LLDCQQCTLH  180
EEFDPGLFGG TNDIEERGKN AESNNLQYIS PPPSAFMGPK CALWDCTRPA QGSEWCKDYC  240
SSFHATLALN EGPPSKNVGI PQCEGAAVMK SPWNAAELFD LSLLDGETIR EWLFFDKPRR  300
AFDSGNRKQR SLPDYSGRGW HESRKQVMKE LGGQKKSYYM DPQPAGCHEW HLFEYEINNC  360
DLCALYRLEL KLANGKKSLK GKVPKDPLAD LQKKMGRLTA VVTSGNGPTL EGKERLIEKT  420
DSGDVNCAHD HKTSGTGMGP GP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC213156	0.0	AC213156.1 Populus trichocarpa clone POP076-I18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011037433.1	0.0	PREDICTED: LOW QUALITY PROTEIN: transcription factor VOZ1-like
Swissprot	Q9SGQ0	1e-145	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A2K1Y4Q3	0.0	A0A2K1Y4Q3_POPTR; Uncharacterized protein
STRING	POPTR_0013s12690.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1498	34	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-146	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]