PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011816.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 315aa    MW: 35470.5 Da    PI: 5.8064
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011816.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ede lvd+vk +G g W+ I ++ g++R++k+c++rw +yl
      CCG011816.1 14 KGAWTPLEDEMLVDYVKIHGEGKWSNIVKETGLKRCGKSCRLRWMNYL 61
                     79********************************************97 PP
2Myb_DNA-binding48.91.5e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++
      CCG011816.1  67 RGNISDDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWHT 110
                      78999*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.601961IPR017930Myb domain
SuperFamilySSF466891.31E-2912108IPR009057Homeodomain-like
SMARTSM007173.2E-151363IPR001005SANT/Myb domain
PfamPF002493.3E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-241568IPR009057Homeodomain-like
CDDcd001674.63E-121661No hitNo description
PROSITE profilePS5129424.63462116IPR017930Myb domain
SMARTSM007171.2E-1466114IPR001005SANT/Myb domain
PfamPF002491.0E-1367110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2369115IPR009057Homeodomain-like
CDDcd001679.08E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGRKPRCSAD GMNKGAWTPL EDEMLVDYVK IHGEGKWSNI VKETGLKRCG KSCRLRWMNY  60
LRPDIKRGNI SDDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWHT NIAKKAQHSQ  120
PRKQPRVDRK QIASGSENGA AVSNVKNQTT ESQYCTTGVV VPATALQENN MAQDHLVSTL  180
AMAPFNTHHE NESSSKGLAS GDNDNLSNIL MDFHYMEDFF KILDSDFPKS SDLNDITSTA  240
NHSTNTIQVD GDHYSVSING CNPREIAEFS ELLEADWTSN KCVQAEQGFD FMSLLSFLDS  300
TDEKWTEDAL ANNLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5731500.0FJ573150.1 Populus tremuloides MYB transcription factor R2R3-like protein (MYB097) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031337.10.0PREDICTED: transcription factor WER-like
TrEMBLA0A3N7F8N50.0A0A3N7F8N5_POPTR; Uncharacterized protein
STRINGPOPTR_0006s29080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1659238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-57myb domain protein 3