PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011646.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 380aa    MW: 42031 Da    PI: 6.4616
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011646.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17269303135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  CCG011646.1 269 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 303
                  99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.8E-7620359IPR016679Transcription factor, GATA, plant
SMARTSM004013.7E-16263313IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.097263299IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-15266327No hitNo description
Gene3DG3DSA:3.30.50.103.5E-14267301IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.58E-14268315No hitNo description
PROSITE patternPS003440269294IPR000679Zinc finger, GATA-type
PfamPF003201.4E-15269303IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MEAPEFYGAS GFFSSQFTSN EKQHSLDSNN KSIGGGDHFI VEDLLDFSNE DDDAMITDPN  60
NNNTFVTATT NSTDSSTVTV VDSCNSSSFS GREPSSFNGD IGSHYTNNFS HHDVHLGSEL  120
CVPYDDLAEL EWLSNFVEES FSSEDLQRLQ LISGMKAPPD ESSKSRHFQT HGDTDDNNNG  180
DVSNISNINN TTFNPETAVP AKARSKRSRA APCNWASRLL VLSPTTSSSD TEIIAGPTPH  240
PNSGKKTIKV EARQKKRDGG VEGCDGRKCL HCATDKTPQW RTGPMGPKTL CNACGVRYKS  300
GRLVPEYRPA ASPTFVLTKH SNSHRKVLEL RRQKEMVRAQ QQHQHQQFLH HHQNMVFGVS  360
NGGDDYLSHQ HVGPDFRQMI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014869.10.0PREDICTED: GATA transcription factor 12-like
SwissprotP697812e-90GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A2K1WVS50.0A0A2K1WVS5_POPTR; GATA transcription factor
STRINGPOPTR_0018s08090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.16e-79GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]