PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG011548.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 359aa MW: 40319.5 Da PI: 7.4586

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG011548.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.9	1.6e-56	17	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL+kkv + ++++ ++i +vd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++ CCG011548.1 17 LPPGFRFHPTDEELISHYLCKKVLDINFSA-RAIGDVDLNKAEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYR-GKS 112 79************************99.89***********888999************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfykgrapkgekt+Wvmheyrle CCG011548.1 113 LVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 143 ***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.27E-64	14	167	IPR003441	NAC domain
PROSITE profile	PS51005	58.9	17	167	IPR003441	NAC domain
Pfam	PF02365	2.0E-29	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MENISGLGKE DDGKMDLPPG FRFHPTDEEL ISHYLCKKVL DINFSARAIG DVDLNKAEPW 60 ELPWKAKMGE KEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KSLVGMKKTL 120 VFYKGRAPKG EKTNWVMHEY RLEGKFSAHN LPKTAKNECV ICRVFQKSSA GKKTYISGLV 180 RLGSFGNEFS PYGLPPLTES SPSNDKIKPV AESAYVPCFS NLSDDQRSQQ DTTDGFNNHL 240 FAVSSNPSEV FPRIPLLNSF YSPQAVAATG DLQYPGSVSI QDHSVVKALI EKQGSNMKQQ 300 SSKFERDMAS VSQESAADMN TEISSVMSNL EVGKRSFDEQ EAPPSTLVQS MDLDCFWNY

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MENISGLGKE DDGKMDLPPG FRFHPTDEEL ISHYLCKKVL DINFSARAIG DVDLNKAEPW  60
ELPWKAKMGE KEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KSLVGMKKTL  120
VFYKGRAPKG EKTNWVMHEY RLEGKFSAHN LPKTAKNECV ICRVFQKSSA GKKTYISGLV  180
RLGSFGNEFS PYGLPPLTES SPSNDKIKPV AESAYVPCFS NLSDDQRSQQ DTTDGFNNHL  240
FAVSSNPSEV FPRIPLLNSF YSPQAVAATG DLQYPGSVSI QDHSVVKALI EKQGSNMKQQ  300
SSKFERDMAS VSQESAADMN TEISSVMSNL EVGKRSFDEQ EAPPSTLVQS MDLDCFWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	14	173	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-55	14	173	17	174	NAC domain-containing protein 19
3swm_B	1e-55	14	173	17	174	NAC domain-containing protein 19
3swm_C	1e-55	14	173	17	174	NAC domain-containing protein 19
3swm_D	1e-55	14	173	17	174	NAC domain-containing protein 19
3swp_A	1e-55	14	173	17	174	NAC domain-containing protein 19
3swp_B	1e-55	14	173	17	174	NAC domain-containing protein 19
3swp_C	1e-55	14	173	17	174	NAC domain-containing protein 19
3swp_D	1e-55	14	173	17	174	NAC domain-containing protein 19
4dul_A	2e-55	14	173	14	171	NAC domain-containing protein 19
4dul_B	2e-55	14	173	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011001871.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-155	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	B9I557	0.0	B9I557_POPTR; Uncharacterized protein
STRING	POPTR_0012s01610.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-154	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]