PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG011424.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 447aa MW: 51488.1 Da PI: 6.8018

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG011424.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.6	2.6e-26	121	217	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt+++v++Li+a+++++e+ +++ +kk++W++vsk+m+ergf++sp+qC++k+++lnkryk+++++ +++ +++++++ +++d + CCG011424.1 121 KWTDKMVRLLITAVSYIGEDATSDCgdgmrrrftvlQKKGKWKSVSKVMAERGFHVSPQQCEDKFNDLNKRYKRLNDMLGRGtSCQVVENPALLDVI 217 7*****************9999888999999999********************************************569999888887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.2E-24	119	244	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MEGNLSQGGM IPGGASFGGP DLQGSMRVHH QGQHPHIVHH HQHPIHRQGS STHPSVHDGF 60 PPTMGAMHNS DQNMSMTYYN KGDGRKNLVS DEDEPSYTEE GADGHNDVRR GKKGSPWHRV 120 KWTDKMVRLL ITAVSYIGED ATSDCGDGMR RRFTVLQKKG KWKSVSKVMA ERGFHVSPQQ 180 CEDKFNDLNK RYKRLNDMLG RGTSCQVVEN PALLDVIDYL TEKDKDDVRK ILSSKHLFYE 240 EMCSYHNGNR LHLPHDPALQ RSLQLALRSR DDHDNDDARR HQHDDLDEDD QEIETDDHDE 300 FGENHVSHGD SRGIHGVLGG SAKRLRPGQG HENVYFGNSS QDPNKVSSYS HPQIAQVDMN 360 QVSPESSRAS WLQKQWMESR TLQLEEQNLK IQQEMLELEK QRFKWQRFSK KRDHELEKLR 420 MENERMKLEN ERMALELKHK EMGADFN

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MEGNLSQGGM IPGGASFGGP DLQGSMRVHH QGQHPHIVHH HQHPIHRQGS STHPSVHDGF  60
PPTMGAMHNS DQNMSMTYYN KGDGRKNLVS DEDEPSYTEE GADGHNDVRR GKKGSPWHRV  120
KWTDKMVRLL ITAVSYIGED ATSDCGDGMR RRFTVLQKKG KWKSVSKVMA ERGFHVSPQQ  180
CEDKFNDLNK RYKRLNDMLG RGTSCQVVEN PALLDVIDYL TEKDKDDVRK ILSSKHLFYE  240
EMCSYHNGNR LHLPHDPALQ RSLQLALRSR DDHDNDDARR HQHDDLDEDD QEIETDDHDE  300
FGENHVSHGD SRGIHGVLGG SAKRLRPGQG HENVYFGNSS QDPNKVSSYS HPQIAQVDMN  360
QVSPESSRAS WLQKQWMESR TLQLEEQNLK IQQEMLELEK QRFKWQRFSK KRDHELEKLR  420
MENERMKLEN ERMALELKHK EMGADFN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011044210.1	0.0	PREDICTED: uncharacterized protein LOC105139468
TrEMBL	A0A3N7F618	0.0	A0A3N7F618_POPTR; Uncharacterized protein
STRING	POPTR_0005s21390.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5001	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-162	sequence-specific DNA binding transcription factors