PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG011343.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C3H

Protein Properties

Length: 735aa MW: 79890.9 Da PI: 6.7761

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG011343.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.4e-07	304	324	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg CCG011343.1 304 PCPDFRK-GACRRGDMCEYAHG 324 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	4.2E-15	51	167	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	2.9E-10	80	156	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	8.9E-17	86	167	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.47E-13	86	165	No hit	No description
SMART	SM00248	0.027	87	117	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	16.865	87	180	IPR020683	Ankyrin repeat-containing domain
PRINTS	PR01415	7.7E-5	88	103	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.888	122	157	IPR002110	Ankyrin repeat
SMART	SM00248	1.9E-4	122	154	IPR002110	Ankyrin repeat
PRINTS	PR01415	7.7E-5	141	155	IPR002110	Ankyrin repeat
SMART	SM00356	4.0E-6	299	325	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.3E-4	304	326	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	304	326	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.0E-5	304	324	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.3E-4	332	362	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	33	334	357	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence Send to blast
MCCRLETLKL AATPTVPTIS SDKNQPSNIV MNHLTVETED TFASLLELAA NNDVEGFKQS 60 IEHDLSCVDE IGLWYGRKKG SKQMVNEHRT PLMVAATYGS IDVIRVILSL SYVDVNRSCG 120 VDKSTALHCA ASGGALNAVD VVKLLLAAGA DCNLADANGH RPVDVIVVPP KLQDVRLVLK 180 ELLAADGCHA EQNLRDSIAT VNSNSPPLSP SMENGSPLSG SDSPTKAKLN DGPLALEKKE 240 YPVDPSLPDI KNSIYSTDEF RMYSFKVRPC SRAYSHDWTE CPFVHPGENA RRRDPRKFHY 300 SCVPCPDFRK GACRRGDMCE YAHGVFECWL HPAQYRTRLC KDGTNCARRV CFFAHTVEEL 360 RPLYVSTGSA VPSPRSSTSG AAAMDFAAAM NLLSGSPSAA SIMSPSPFTP PMSPSANGIS 420 HSSVAWPQPN VPALHLPGSN LQSSRLRSSL NARDIPADYS LLPDFDGQQQ QLLSELSSLT 480 QPSLNNNSMN HSGRLKTLTP SNLDDLFLAE SSSPRYTGSS PRYADQALAS AVFSPSHKSA 540 VLNQFQQQQS MLSPINTNFS PKNVDHPLLQ ASFASGRMSP RNVEPISPIS PRVSMLAQRE 600 KQRQQLRSLS SRELGSNAAA IVGSPVNTWS KWGSSNGKPD WTLSTDELGK LCRSNSFEFG 660 NGDGPDLSWV HSLVKESPTE MKDELKMPVS SSIAASASRS ESSNMKSQIE TIDLDNMVGS 720 WVEPLQIDQL VAQQN

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence Send to blast

MCCRLETLKL AATPTVPTIS SDKNQPSNIV MNHLTVETED TFASLLELAA NNDVEGFKQS  60
IEHDLSCVDE IGLWYGRKKG SKQMVNEHRT PLMVAATYGS IDVIRVILSL SYVDVNRSCG  120
VDKSTALHCA ASGGALNAVD VVKLLLAAGA DCNLADANGH RPVDVIVVPP KLQDVRLVLK  180
ELLAADGCHA EQNLRDSIAT VNSNSPPLSP SMENGSPLSG SDSPTKAKLN DGPLALEKKE  240
YPVDPSLPDI KNSIYSTDEF RMYSFKVRPC SRAYSHDWTE CPFVHPGENA RRRDPRKFHY  300
SCVPCPDFRK GACRRGDMCE YAHGVFECWL HPAQYRTRLC KDGTNCARRV CFFAHTVEEL  360
RPLYVSTGSA VPSPRSSTSG AAAMDFAAAM NLLSGSPSAA SIMSPSPFTP PMSPSANGIS  420
HSSVAWPQPN VPALHLPGSN LQSSRLRSSL NARDIPADYS LLPDFDGQQQ QLLSELSSLT  480
QPSLNNNSMN HSGRLKTLTP SNLDDLFLAE SSSPRYTGSS PRYADQALAS AVFSPSHKSA  540
VLNQFQQQQS MLSPINTNFS PKNVDHPLLQ ASFASGRMSP RNVEPISPIS PRVSMLAQRE  600
KQRQQLRSLS SRELGSNAAA IVGSPVNTWS KWGSSNGKPD WTLSTDELGK LCRSNSFEFG  660
NGDGPDLSWV HSLVKESPTE MKDELKMPVS SSIAASASRS ESSNMKSQIE TIDLDNMVGS  720
WVEPLQIDQL VAQQN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	82	GRKKGSKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011020339.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Refseq	XP_011020340.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	B9H9X3	0.0	B9H9X3_POPTR; Uncharacterized protein
STRING	POPTR_0006s05240.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1732	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]