PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011342.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 699aa    MW: 76338.5 Da    PI: 6.2828
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011342.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07276296526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C++f++ G C++Gd C +aHg
  CCG011342.1 276 PCPDFRK-GACRRGDMCEYAHG 296
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484037.15E-1615135IPR020683Ankyrin repeat-containing domain
PfamPF127961.0E-853126IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.6E-1755135IPR020683Ankyrin repeat-containing domain
CDDcd002044.60E-1456134No hitNo description
SMARTSM002480.0515787IPR002110Ankyrin repeat
PROSITE profilePS5029717.10457150IPR020683Ankyrin repeat-containing domain
SMARTSM002487.8E-492124IPR002110Ankyrin repeat
PROSITE profilePS5008812.42292127IPR002110Ankyrin repeat
SMARTSM003564.0E-6271297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582276298IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-5276296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4276298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4304334IPR000571Zinc finger, CCCH-type
SMARTSM0035633306329IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MNHLTVETED TFASLLELAA NNDVEGFKRS IERDPSCVDQ IGLWYGRQKG SKQMANEYRT  60
PLMVAATYGS IGVIKVILSL SDADVNRSCG VDKSTALHCA ASGGAVNAVD VVKLLLAAGA  120
DANVVDANGH RPIDTIVVPP KFQEVRLTLE ELLSAEGYVI EHNLRVSMSN ANSNSPPRSP  180
SLEDMSLLSG SDSPMKSKLN EAPVPFVSEK KEYPVDPSLP DIKNSIYSTD EFRMYSFKVR  240
PCSRAYSHDW TECPFVHPGE NARRRDPRKF HYSCVPCPDF RKGACRRGDM CEYAHGVFEC  300
WLHPAQYRTR LCKDGTNCAR RVCFFAHTVE ELRPLYVSTG SAVPSPRSST SGATAMDFAA  360
AMSLLPGSPS ASVMSPQPFS PPMSPSANGL SHSSMAWLQP NVPALHLPGS NLQSSRLRSS  420
LNARDIQADY NLLPDFDVQQ QQLLSELSSL SQPSLSNNSL NRSGRLKTLT PSNLDILFSA  480
ESLSPRYADQ ALASAVFSPS HKSAVLNQFQ QQQSMLSPIN TNFSPKNADH PLLQASFASG  540
RMSPRSVEPI SPMSSRVSML AQREKQQQHL HSVSSQELVS NAAAIVGSPV NSWSKWGSSN  600
GKPDWTVSAD EFGKLCRSNS FELGNGDEPD VSWVQSLVKE SPTEMEEMST VHVSESITAS  660
ASSSESSNIN SHIEHVDLDH AVGSWVEQLH IDHLVVQQN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826860.0AC182686.2 Populus trichocarpa clone Pop1-37M17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020337.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
RefseqXP_011020338.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2K1ZX870.0A0A2K1ZX87_POPTR; Uncharacterized protein
STRINGPOPTR_0006s05250.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]