PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG011223.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | YABBY | ||||||||
Protein Properties | Length: 188aa MW: 21149.9 Da PI: 8.6171 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 200.6 | 6.3e-62 | 9 | 161 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklse 103 eq+ y+ CnfCn +lavsvP +slf +vtvrCGhC+++ svn+a + q l+ +++++ ++++++ ++ +++ +++ sv + CCG011223.1 9 PNEQLRYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCSNIWSVNMAATFQSLPWQDQVQA-------SNHNSHDYRIDLGSSSKFNNKISV-----RT 94 5799***************************************************98332.......333333333333333332222222.....33 PP YABBY 104 nedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + v++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl CCG011223.1 95 PAANIVTQERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 161 3344445555689****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.1E-69 | 9 | 161 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.11E-8 | 106 | 154 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.4E-4 | 109 | 155 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MSSCIDAVPN EQLRYIPCNF CNIVLAVSVP CSSLFDIVTV RCGHCSNIWS VNMAATFQSL 60 PWQDQVQASN HNSHDYRIDL GSSSKFNNKI SVRTPAANIV TQERVVNRPP EKRQRVPSAY 120 NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG LMLGTNSQTK VDDGSEKHLM 180 SRSALPNN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ667744 | 3e-60 | KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds. | |||
GenBank | KJ667746 | 3e-60 | KJ667746.1 Solanum virginianum YAB5 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011020144.1 | 1e-139 | PREDICTED: axial regulator YABBY 5-like | ||||
Swissprot | Q8GW46 | 2e-80 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | B9HAJ0 | 1e-128 | B9HAJ0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s06700.1 | 1e-129 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 7e-83 | YABBY family protein |
Publications ? help Back to Top | |||
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