PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011139.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 1118aa    MW: 123313 Da    PI: 6.7335
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011139.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.81.7e-22135236199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++l
  CCG011139.1 135 FCKTLTASDTSTHGGFSVPRRAAEKIfpplnfSMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKQQL 229
                  99*****************************9445444.48************************************************..5688889 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +++++r+
  CCG011139.1 230 LLGIRRA 236
                  ****997 PP
2Auxin_resp120.51.3e-39261344183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  CCG011139.1 261 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 344
                  79********************************9989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.27E-43124264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-41126250IPR015300DNA-binding pseudobarrel domain
CDDcd100177.22E-19134226No hitNo description
PfamPF023621.4E-20135236IPR003340B3 DNA binding domain
SMARTSM010195.9E-23135237IPR003340B3 DNA binding domain
PROSITE profilePS5086311.97135237IPR003340B3 DNA binding domain
PfamPF065077.7E-35261344IPR010525Auxin response factor
PROSITE profilePS5174521.7369961090IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1118 aa     Download sequence    Send to blast
MKSPATGAGG TAATSTATNG EGAEKKSINP ELWQACAGPL VNLPAAGTHV VYFPQGHSEQ  60
VAASMKKDVD AQIPNYPNLP SKLLCLLHNV TLHADPETDE VYAQMTLQPV SSFDKDALLR  120
SDLALKSNKP QTEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLNFSMQP PAQELVARDL  180
HDNVWTFRHI YRGQPKRHLL TTGWSLFVSG KRLFAGDSVL FIRDEKQQLL LGIRRANRQP  240
TNLSSSVLSS DSMHIGILAA AAHAAANNSP FTVFYNPRAS PSEFVIPLAK YYKAVYSNQI  300
SLGMRFRMMF ETEESGTRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERRNRVS  360
IWEIEPVTAP FFICPPPFFR SKRPRQPGMR DDDSSDLDSL FKRTMPWLGD ELCMKDPQAL  420
PGLSLVQWMN MQQNPSLANS MQPNYMQSLS GSVLQNLPGA DLSRQLGLSS PQMPQPSNVQ  480
FNAQRLPQQA QQLDQLPKLQ SSLIPLGSIM QPQQQMGDIT QQSRHNLMAQ TLPSSQVQAQ  540
LLQPQTLAQT NNILQQQPSI QSHQLLRNLP QTLHHQQQNQ QQSLMQSQLS DHVNQHVQIS  600
DNQIQLQLLQ KLQQQQQSLL AQQSAMQQAG QLGQLQDSQR QLLDASQSFS RSMAPSQMLE  660
IPQTAPTSLP QPNTIPQQLT KNTNQNNARF SNPPQQPKLQ QQTGILPVSE MAGHMGLPPS  720
SMANQLSTAG SSILTAAAGQ GQSGITDDLP SCSTSPSTNN CPNMVQPMIN SQAHRSTAMG  780
EDMAQSAATL LNPSALETVS SNGKLVKDLL QKSEVKPSLN ISKNQSLGFF TPQTYLNGVA  840
AQTDYLDTSS STTSICLSQN DVHLQQNNNS LSYNPQPMLL RDTIHDGELQ ADLRNNIPCG  900
TNIDSQLAMP MSSDHLLTKG MVGLGKDFSN NFSSAGMLTS CEASKDPQQD LSSSMVSQSF  960
GVPDMPFNQI NSAINDNSCL NRGAWAPPQQ QFQRMRTYTK VHKRGAVGRS IDIARYSGYA  1020
ELKQDLARRF GIEGQLEDQQ RIGWKLVYVD LDDDVLLVGD DPWENDCPSW EVSREFVDCV  1080
RCIKILSPQE VQQMSLVGDF GNSVLPNQAC SSSDNVNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1712236545388Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011019970.10.0PREDICTED: auxin response factor 19-like
TrEMBLU5G6140.0U5G614_POPTR; Auxin response factor
STRINGPOPTR_0006s07740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19