PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011081.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 548aa    MW: 60668.2 Da    PI: 7.4314
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011081.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-1779125148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde l  av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
      CCG011081.1  79 KGGWTPEEDETLRTAVATYKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 125
                      688*****************************.************986 PP
2Myb_DNA-binding61.91.3e-19131177148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+++v++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
      CCG011081.1 131 KGPWTQEEDDKIVELVAKYGPTKWSVIAKALP-GRIGKQCRERWHNHL 177
                      79******************************.*************97 PP
3Myb_DNA-binding54.92e-17183226146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++++k++w++
      CCG011081.1 183 KDAWTLEEELALMNAHRIYGNK-WAEIAKVLP-GRTDNSIKNHWNS 226
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0974125IPR017930Myb domain
SMARTSM007174.9E-1578127IPR001005SANT/Myb domain
PfamPF002498.8E-1679125IPR001005SANT/Myb domain
SuperFamilySSF466893.37E-1580135IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-2281133IPR009057Homeodomain-like
CDDcd001671.81E-1382125No hitNo description
PROSITE profilePS5129432.543126181IPR017930Myb domain
SuperFamilySSF466894.03E-32128224IPR009057Homeodomain-like
SMARTSM007171.7E-18130179IPR001005SANT/Myb domain
PfamPF002491.1E-18131177IPR001005SANT/Myb domain
CDDcd001675.22E-16133177No hitNo description
Gene3DG3DSA:1.10.10.605.4E-28134180IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-23181232IPR009057Homeodomain-like
SMARTSM007171.2E-16182230IPR001005SANT/Myb domain
PROSITE profilePS5129422.728182232IPR017930Myb domain
PfamPF002491.3E-15183226IPR001005SANT/Myb domain
CDDcd001671.16E-12185228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MSMSSSSIPA TSLEAEKEEM DELKIEERCL ENKQLTPASS SSQSEEGSGS AILKSPGVYS  60
PATVSPTNRR TTGPIRRAKG GWTPEEDETL RTAVATYKGK SWKKIAEFFP DRSEVQCLHR  120
WQKVLDPELV KGPWTQEEDD KIVELVAKYG PTKWSVIAKA LPGRIGKQCR ERWHNHLNPD  180
IKKDAWTLEE ELALMNAHRI YGNKWAEIAK VLPGRTDNSI KNHWNSSLKK KLDFYLSTGK  240
LPPISKNGFQ NGTKDTNKSA VMKTMKESDS AAQTSSGTTD ICKLDDGKDQ LESTLVLDVA  300
ASSSVLPNEY ADSVDLSCCD SESQQKFEDH QDKGIGSGLQ FDRSTYGSLY YEPPLVEQLD  360
SYPSNMGNVQ HENNSCPVSS PIIFFTPPCV KSCDLSAQSP ESILRIAAMS FPNTPSIFRK  420
RKTAHVDRLP SKIGKVGEET VKDRLDMSVE HEKIESTLEK TAVQDGSLCE SPASLGNGTI  480
RPNDKPFNAS PPYRLRSKRT AVFKSVERQL EFTFEKGRSD GTKPTRLSVK GGSPVTEDCS  540
RATKMGVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-68782325159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-68782325159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5673440.0AJ567344.1 Populus tremula x Populus tremuloides mRNA for MYB transcription factor R3 type (myb gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011019867.10.0PREDICTED: uncharacterized protein LOC105122457 isoform X1
SwissprotQ6R0321e-175MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A2K1ZZ160.0A0A2K1ZZ16_POPTR; Uncharacterized protein
STRINGPOPTR_0006s08570.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-165myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]