PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011072.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 678aa    MW: 74586.2 Da    PI: 9.7759
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011072.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.8e-08587636147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r ++T  E e lv+av++lG+g+W+ +  +     ++Rt  ++k++w ++
      CCG011072.1 587 RRPFTVSEVEALVQAVEKLGTGRWRDVKLHAFdkaNHRTYVDLKDKWKTL 636
                      679*************************99999999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542363.54E-6392466IPR029071Ubiquitin-related domain
PROSITE profilePS5129416.758582641IPR017930Myb domain
SMARTSM007172.2E-8586639IPR001005SANT/Myb domain
PfamPF002491.2E-5587636IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-11587637IPR009057Homeodomain-like
CDDcd116607.51E-18588638No hitNo description
SuperFamilySSF466899.72E-16588669IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MVFQRRLDYG FDGYQVPVVP RASRSARGRG PIRKKSENNQ KHAFEILASV AGEILQEEET  60
SAPTNTACGK DLCNVKNTIQ KEQVDRGKFL IIEPLLGEPC NEKAFACIPE LQGHWHGNAL  120
NKFFNNQESF NSQGSLASER FDYPETIYVA EKLVVVNSKN AGGSPSCEMN GESSHARKFF  180
KGKVGGLTER KPDAELVKSS SIESGTLLVK DGSEDAMDLD AGSIGHASVE SNVKASLFKD  240
CIGLCPFSRP CADVEVVSRD DDGNSSGCSQ YGTRPKTSRP LSYTETRRMS NLTASRHWRA  300
APNSKSGGYF RTDWKTKPPF RNGRTSYSCQ RSQKIFPFKK RKFFDQSTLP TSDGAFHCED  360
VFNSSNKRTN GNNMVSATEA SSSVTGQHAS LDSRDCNVKL SIKSFKVPEL FIEIPATATV  420
GSLKRTVMEA ITAILGDGLH VGILLQGKKV RDDNKTLLQT GISEDDKHSN LGFMLESRHA  480
KMMSPPHTKN PSNLPFRASG GISRHTTSLM LQAGTSHASS VPAETNFSSS VGSDLGAVCS  540
LSKASTADKM SDSRALVPVP PIGRGALSVV PFNCKSMRPE FGQRRIRRPF TVSEVEALVQ  600
AVEKLGTGRW RDVKLHAFDK ANHRTYVDLK DKWKTLVHTA RISPQQRRGE PVPQEVLDRV  660
LAAHAYWSYR RQLVKAEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-51571668198Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332341QKIFPFKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011019849.10.0PREDICTED: telomere repeat-binding protein 5-like
RefseqXP_011019850.10.0PREDICTED: telomere repeat-binding protein 5-like
RefseqXP_011019851.10.0PREDICTED: telomere repeat-binding protein 5-like
TrEMBLA0A2K1ZZ440.0A0A2K1ZZ44_POPTR; Uncharacterized protein
STRINGPOPTR_0006s08680.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131882124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-123TRF-like 2