PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011004.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 420aa    MW: 46880.2 Da    PI: 4.7065
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011004.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.4e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEde+l ++++  G g+W++ ++  g+ R++k+c++rw +yl
      CCG011004.1 14 KGRWTAEEDEKLTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding54.92.1e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ ++eE+e+++++++ lG++ W++Ia++++ gRt++++k++w+++l
      CCG011004.1  67 RGNISAEEEEIIINLHASLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112
                      7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.066961IPR017930Myb domain
SuperFamilySSF466894.4E-2811108IPR009057Homeodomain-like
SMARTSM007171.2E-111363IPR001005SANT/Myb domain
PfamPF002493.0E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-211568IPR009057Homeodomain-like
CDDcd001674.47E-91661No hitNo description
PROSITE profilePS5129425.14662116IPR017930Myb domain
SMARTSM007174.3E-1766114IPR001005SANT/Myb domain
PfamPF002492.3E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2569116IPR009057Homeodomain-like
CDDcd001671.77E-780112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDEKLTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LAADLKRGNI SAEEEEIIIN LHASLGNRWS LIASHLPGRT DNEIKNYWNS HLSRRIYSFR  120
RPVNERQPLI IETAKEGMLA KSGAGRFAIK KKLISHPQKD AIRVPTKRPR KENNTGDFSN  180
SNVEGIQLPQ TPAAEKNTLS STINDTVIWD PCAEDKDLMD LVVTTPCPET GGVMLGSRGE  240
KANLVICPSE ERRRPNSLLN PSGGEKENDS FGQFCEGIEN EMLSFNEVMM DKELLDPDGD  300
SSLNDEGQNG LLVHSGERQS GVSSPDKTVN VFESIGDLSS NGESGDWHSF SSISTSGFDY  360
GGVDWNWDDV MGGHLEIGDE TKEENMLSWL WESEKEEEET QRLEDVANCD KQNAMLWLLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-23121162105MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-231211656159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-231211656159MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-231211625128MYB TRANSFORMING PROTEIN
1mse_C1e-23121162105C-Myb DNA-Binding Domain
1msf_C1e-23121162105C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2087310.0AC208731.1 Populus trichocarpa clone JGIACSB1073-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041499.10.0PREDICTED: protein ODORANT1-like
TrEMBLB9I9L10.0B9I9L1_POPTR; Uncharacterized protein
STRINGPOPTR_0014s11780.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2814433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-67myb domain protein 111