PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010786.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 303aa    MW: 34549.5 Da    PI: 6.783
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010786.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.32.2e-12166191126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  y   +C+++ +tG+C yGd+CkF+H+
  CCG010786.1 166 YQPDICKDYKETGYCGYGDSCKFMHD 191
                  67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.7E-9164196IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7165192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878165193IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10166191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-12166196IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.9E-13235283IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139202.3E-9241282No hitNo description
SuperFamilySSF578507.32E-13241284No hitNo description
CDDcd001623.62E-8242283No hitNo description
PROSITE profilePS5008910.616242280IPR001841Zinc finger, RING-type
SMARTSM001848.7E-5242279IPR001841Zinc finger, RING-type
PROSITE patternPS005180257266IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MKNKNIRKRM IDEDEDEDED SKTQTSLLHS QKKASKADNK LYFSTGPSKK SSESNAEPER  60
LLFQFESSKE IQVQHDSRAT ATLETETEFS KDARAIRERA LKQADDALKG KKMSSGDEKL  120
YKGIHGYTDH KAGFRREQTI SSEKAGGSHG PLRASAHIRV SARFDYQPDI CKDYKETGYC  180
GYGDSCKFMH DRGDYKSGWQ MEKEWEEAEK ARKRNLALGM DDEEVGGAGD DDDDEDELPF  240
ACFICRENFV DPVMTKCKHY FCEHCALKHH AKNKKCFVCN EPTLGIFNAA HEIRKKMAEA  300
GKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M8e-6476297113317RING finger protein 113A
5z58_M8e-6476297113317RING finger protein 113A
6ff4_t8e-6476297113317RING finger protein 113A
6ff7_t8e-6476297113317RING finger protein 113A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038006.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-171C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A2K1XT330.0A0A2K1XT33_POPTR; Uncharacterized protein
STRINGXP_002522169.11e-178(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-154C3H family protein