PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG010655.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 316aa MW: 34546 Da PI: 7.0431 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56 | 9e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEdellv ++k+ G g+W++ ++ g+ R++k+c++rw +yl CCG010655.1 14 KGAWTPEEDELLVSYIKKNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 45.1 | 2.2e-14 | 68 | 112 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++T eE++l ++++ lG++ W++Ia+ ++ gRt++++k+ w+++l CCG010655.1 68 HPFTLEEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 112 589******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.5E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.306 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.60E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.346 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-13 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.99E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MGRTPCCDKN GLKKGAWTPE EDELLVSYIK KNGHGSWRSL PKLAGLLRCG KSCRLRWTNY 60 LRPDIKRHPF TLEEEKLVIQ LHGILGNRWA AIASQLPGRT DNEIKNLWNT HLKKRLLCLG 120 LDPQTHEPFT SRGPANKGPA SPATRHMTQW ESARLEAEAR LSRESSLFLP PIPGKIDCDY 180 FLRIWNSEVG ESFRRISMGG AKTACPSPVS QASSSTKCGS ISAITADISP NLTGSSAAAS 240 NQNEDMECKS CRSDAEDVMA GPDSSSSAES EDSTDSTLQL LLDFPINNDM SFLEGNIDSY 300 ATSSGMLTGT SMIPPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-27 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034721 | 4e-42 | KM034721.1 Jatropha curcas clone JcMYB101 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011035902.1 | 0.0 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | Q9M2D9 | 1e-131 | MYB17_ARATH; Transcription factor MYB17 | ||||
TrEMBL | B9I8G7 | 0.0 | B9I8G7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s07700.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2331 | 32 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 1e-123 | myb domain protein 17 |