PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG010323.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 974aa MW: 109526 Da PI: 8.4523 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.1 | 9.9e-16 | 55 | 131 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++p +f+++++gk+++ ++l +sg +W+ +l ++ + ++++GW+eFv+++ L+ gD +vF+++g+ +f v+vf++ CCG010323.2 55 RIPVSFIKHMEGKTPG--LVSLLGPSGDVWTAEL--TQENDDLLFSNGWSEFVRDHFLECGDLLVFRYHGELCF--SVQVFDQ 131 89*****888888666..7***************..999999**************************999999..9999987 PP | |||||||
2 | B3 | 45.8 | 1.1e-14 | 290 | 379 | 2 | 94 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 + ++++ +v+ s l +p +f +h +++ ++++l++ +g sW+v+ ++ +++l +GW Fv++n++++gD+++F+l+++ el+v CCG010323.2 290 VRIMKRFNVSGSYTLNIPYQFSMAHL--PNCRTEIILRTIKGASWSVNSVPaTRVHTSHTLCGGWMAFVRSNDINVGDVCIFELVRK--YELRV 379 56667777888889*******98996..45889***************955677777899***********************9874..33344 PP | |||||||
3 | B3 | 45.9 | 1e-14 | 518 | 607 | 4 | 96 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++ + +v+ s l +p +f +++ ++++++++l +++g+ W+v+ + k+++ +++ +GW Fv++n++k gD+++F+l+g+ + +v++ CCG010323.2 518 IMRKFNVSGSYTLKIPHQFSAAYL--PNCKTEVILCSLQGQCWTVNSLPDSKGRAvHTFCGGWMAFVRDNNIKIGDICMFELVGKCQM--RVQI 607 566667788889********9996..45899****************6655555579999**********************995444..5554 PP | |||||||
4 | B3 | 51 | 2.7e-16 | 653 | 727 | 18 | 98 |
--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +p kf +h ++k +tl+ +sg +W+v+l + +++++++ GW+eFvk++ L+e+D ++Fk++g+s f v +f+ CCG010323.2 653 IPDKFS-NHlKNK--LLESVTLKGPSGSTWQVEL--TTDDNTMFFKHGWEEFVKDHFLEEKDLLIFKYNGESYF--DVLIFD 727 999998.552433..5568***************..999999**************************998888..788776 PP | |||||||
5 | B3 | 47.9 | 2.4e-15 | 875 | 972 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkv 96 f+ v++p +v ++ +v+p ++h + +k++++ + ++W+ ++ y k++++ l++GWk+F+ +n+L+e D+++F+ +g+ ++f l v + CCG010323.2 875 FVVVMKPTHVYRKFYMVIPSAWSTRHLR--TLEKKVVILRVKENTWNTNFLYYKSKNSGGLSSGWKSFALDNNLQEFDVCLFEPSGTmnNSFVLDVNI 970 7899*******************99953..36679*****************99999999***********************887634556666666 PP E- CS B3 97 fr 98 fr CCG010323.2 971 FR 972 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 1.9E-11 | 41 | 132 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-20 | 44 | 134 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.33E-20 | 44 | 134 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.53E-14 | 53 | 130 | No hit | No description |
Pfam | PF02362 | 3.4E-13 | 54 | 131 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.239 | 56 | 132 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.2E-21 | 285 | 383 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-22 | 286 | 386 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.60E-18 | 287 | 383 | No hit | No description |
PROSITE profile | PS50863 | 13.197 | 289 | 385 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-11 | 289 | 379 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-10 | 289 | 385 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.6E-22 | 507 | 608 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-22 | 508 | 609 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.27E-17 | 513 | 607 | No hit | No description |
Pfam | PF02362 | 6.3E-12 | 515 | 606 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.492 | 515 | 611 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.9E-13 | 515 | 611 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.9E-8 | 642 | 729 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.53E-18 | 652 | 727 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-19 | 653 | 727 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.972 | 653 | 729 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.3E-14 | 653 | 727 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.67E-17 | 653 | 727 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-19 | 869 | 972 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.2E-17 | 874 | 963 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.393 | 875 | 974 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-14 | 875 | 972 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.03E-21 | 875 | 972 | No hit | No description |
SMART | SM01019 | 1.1E-12 | 875 | 974 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 974 aa Download sequence Send to blast |
MTIDNQSEKM VNIVWRPCFF VIFSSNLSSE RLILDLLDIS LITGLTQSKL FTWQRIPVSF 60 IKHMEGKTPG LVSLLGPSGD VWTAELTQEN DDLLFSNGWS EFVRDHFLEC GDLLVFRYHG 120 ELCFSVQVFD QSACEKEAAF HSKCSQGCSE FCESTGKKRE REEEAASLEK DFVCARKKVR 180 EGSSEFHSAY IEKNREAHIS ACDVGGCQHN GVLTTEESLP RETNQCGNPA NCFATPPQSK 240 ACSEKQEVPI WKRFGKDDDL KLHDRGHVSI FSEREKRVAE SFISCFPYFV RIMKRFNVSG 300 SYTLNIPYQF SMAHLPNCRT EIILRTIKGA SWSVNSVPAT RVHTSHTLCG GWMAFVRSND 360 INVGDVCIFE LVRKYELRVF ILRVGKEGPD METGKVVSNG ENTGCPAIAH TTESFPKKSR 420 RNCLKVHSKL INKAEICDKK EFEKSQATGI LRHGNVTKDS ASAVLFSMSR TGDAKQQAPP 480 IQNGKGVEAE AGLRRLVALD EERAARSFTS GFPNFVRIMR KFNVSGSYTL KIPHQFSAAY 540 LPNCKTEVIL CSLQGQCWTV NSLPDSKGRA VHTFCGGWMA FVRDNNIKIG DICMFELVGK 600 CQMRVQISGV GHEVVNHQIG NPASNDLPLL AVPRNDPPSR GTWKSPALAG HPIPDKFSNH 660 LKNKLLESVT LKGPSGSTWQ VELTTDDNTM FFKHGWEEFV KDHFLEEKDL LIFKYNGESY 720 FDVLIFDGQS FCEKAASYFV RKCGHREGDS FVQTKRKAVE DSVEVTNASP HNGLGGTPEK 780 SADGYIYKTP VRNSVVSKAI NKKTRREIKF SKPIQTRKRV RYEGASSTAE EIETKPDVQH 840 TPIGTACVSS IRMVTEQDKL NALRLAQTAQ TNEGFVVVMK PTHVYRKFYM VIPSAWSTRH 900 LRTLEKKVVI LRVKENTWNT NFLYYKSKNS GGLSSGWKSF ALDNNLQEFD VCLFEPSGTM 960 NNSFVLDVNI FRAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 3e-13 | 852 | 972 | 25 | 141 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-13 | 852 | 972 | 25 | 141 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011030771.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1 | ||||
Refseq | XP_011030779.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1 | ||||
Refseq | XP_011030787.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1 | ||||
TrEMBL | A0A2K1XQ18 | 0.0 | A0A2K1XQ18_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s03610.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11470 | 32 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-58 | B3 family protein |