PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010323.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 974aa    MW: 109526 Da    PI: 8.4523
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010323.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.19.9e-16551311799
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  ++p +f+++++gk+++   ++l  +sg +W+ +l  ++  +  ++++GW+eFv+++ L+ gD +vF+++g+ +f   v+vf++
  CCG010323.2  55 RIPVSFIKHMEGKTPG--LVSLLGPSGDVWTAEL--TQENDDLLFSNGWSEFVRDHFLECGDLLVFRYHGELCF--SVQVFDQ 131
                  89*****888888666..7***************..999999**************************999999..9999987 PP

2B345.81.1e-14290379294
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  + ++++ +v+ s  l +p +f  +h   +++ ++++l++ +g sW+v+    ++   +++l +GW  Fv++n++++gD+++F+l+++   el+v
  CCG010323.2 290 VRIMKRFNVSGSYTLNIPYQFSMAHL--PNCRTEIILRTIKGASWSVNSVPaTRVHTSHTLCGGWMAFVRSNDINVGDVCIFELVRK--YELRV 379
                  56667777888889*******98996..45889***************955677777899***********************9874..33344 PP

3B345.91e-14518607496
                  E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  ++ + +v+ s  l +p +f +++   ++++++++l +++g+ W+v+   + k+++ +++ +GW  Fv++n++k gD+++F+l+g+ +   +v++
  CCG010323.2 518 IMRKFNVSGSYTLKIPHQFSAAYL--PNCKTEVILCSLQGQCWTVNSLPDSKGRAvHTFCGGWMAFVRDNNIKIGDICMFELVGKCQM--RVQI 607
                  566667788889********9996..45899****************6655555579999**********************995444..5554 PP

4B3512.7e-166537271898
                  --HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  +p kf  +h ++k      +tl+ +sg +W+v+l  +  +++++++ GW+eFvk++ L+e+D ++Fk++g+s f   v +f+
  CCG010323.2 653 IPDKFS-NHlKNK--LLESVTLKGPSGSTWQVEL--TTDDNTMFFKHGWEEFVKDHFLEEKDLLIFKYNGESYF--DVLIFD 727
                  999998.552433..5568***************..999999**************************998888..788776 PP

5B347.92.4e-15875972198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkv 96 
                  f+ v++p +v ++  +v+p    ++h    + +k++++   + ++W+ ++ y k++++  l++GWk+F+ +n+L+e D+++F+ +g+  ++f l v +
  CCG010323.2 875 FVVVMKPTHVYRKFYMVIPSAWSTRHLR--TLEKKVVILRVKENTWNTNFLYYKSKNSGGLSSGWKSFALDNNLQEFDVCLFEPSGTmnNSFVLDVNI 970
                  7899*******************99953..36679*****************99999999***********************887634556666666 PP

                  E- CS
           B3  97 fr 98 
                  fr
  CCG010323.2 971 FR 972
                  65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.9E-1141132IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-2044134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-2044134IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-1453130No hitNo description
PfamPF023623.4E-1354131IPR003340B3 DNA binding domain
PROSITE profilePS5086313.23956132IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.2E-21285383IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-22286386IPR015300DNA-binding pseudobarrel domain
CDDcd100176.60E-18287383No hitNo description
PROSITE profilePS5086313.197289385IPR003340B3 DNA binding domain
PfamPF023622.1E-11289379IPR003340B3 DNA binding domain
SMARTSM010192.3E-10289385IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.6E-22507608IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-22508609IPR015300DNA-binding pseudobarrel domain
CDDcd100172.27E-17513607No hitNo description
PfamPF023626.3E-12515606IPR003340B3 DNA binding domain
PROSITE profilePS5086312.492515611IPR003340B3 DNA binding domain
SMARTSM010195.9E-13515611IPR003340B3 DNA binding domain
SMARTSM010193.9E-8642729IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-18652727IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-19653727IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.972653729IPR003340B3 DNA binding domain
PfamPF023628.3E-14653727IPR003340B3 DNA binding domain
CDDcd100172.67E-17653727No hitNo description
Gene3DG3DSA:2.40.330.101.6E-19869972IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-17874963IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.393875974IPR003340B3 DNA binding domain
PfamPF023622.5E-14875972IPR003340B3 DNA binding domain
CDDcd100177.03E-21875972No hitNo description
SMARTSM010191.1E-12875974IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 974 aa     Download sequence    Send to blast
MTIDNQSEKM VNIVWRPCFF VIFSSNLSSE RLILDLLDIS LITGLTQSKL FTWQRIPVSF  60
IKHMEGKTPG LVSLLGPSGD VWTAELTQEN DDLLFSNGWS EFVRDHFLEC GDLLVFRYHG  120
ELCFSVQVFD QSACEKEAAF HSKCSQGCSE FCESTGKKRE REEEAASLEK DFVCARKKVR  180
EGSSEFHSAY IEKNREAHIS ACDVGGCQHN GVLTTEESLP RETNQCGNPA NCFATPPQSK  240
ACSEKQEVPI WKRFGKDDDL KLHDRGHVSI FSEREKRVAE SFISCFPYFV RIMKRFNVSG  300
SYTLNIPYQF SMAHLPNCRT EIILRTIKGA SWSVNSVPAT RVHTSHTLCG GWMAFVRSND  360
INVGDVCIFE LVRKYELRVF ILRVGKEGPD METGKVVSNG ENTGCPAIAH TTESFPKKSR  420
RNCLKVHSKL INKAEICDKK EFEKSQATGI LRHGNVTKDS ASAVLFSMSR TGDAKQQAPP  480
IQNGKGVEAE AGLRRLVALD EERAARSFTS GFPNFVRIMR KFNVSGSYTL KIPHQFSAAY  540
LPNCKTEVIL CSLQGQCWTV NSLPDSKGRA VHTFCGGWMA FVRDNNIKIG DICMFELVGK  600
CQMRVQISGV GHEVVNHQIG NPASNDLPLL AVPRNDPPSR GTWKSPALAG HPIPDKFSNH  660
LKNKLLESVT LKGPSGSTWQ VELTTDDNTM FFKHGWEEFV KDHFLEEKDL LIFKYNGESY  720
FDVLIFDGQS FCEKAASYFV RKCGHREGDS FVQTKRKAVE DSVEVTNASP HNGLGGTPEK  780
SADGYIYKTP VRNSVVSKAI NKKTRREIKF SKPIQTRKRV RYEGASSTAE EIETKPDVQH  840
TPIGTACVSS IRMVTEQDKL NALRLAQTAQ TNEGFVVVMK PTHVYRKFYM VIPSAWSTRH  900
LRTLEKKVVI LRVKENTWNT NFLYYKSKNS GGLSSGWKSF ALDNNLQEFD VCLFEPSGTM  960
NNSFVLDVNI FRAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1385297225141B3 domain-containing transcription factor VRN1
4i1k_B3e-1385297225141B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030771.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_011030779.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_011030787.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
TrEMBLA0A2K1XQ180.0A0A2K1XQ18_POPTR; Uncharacterized protein
STRINGPOPTR_0014s03610.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-58B3 family protein