PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG009896.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 336aa MW: 37805.4 Da PI: 9.2867

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG009896.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.1	8.4e-17	19	107	2	82
trihelix 2 WtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 Wt +e+++Liea+r ++er +++ + +W++v ++++++ + rs++qC++kw+nl ++ykk+++ e+k +++ +++ +y+ CCG009896.1 19 WTVSETMVLIEAKRMDDERRMKRSdsaegrskPTELRWKWVEDYCWKQECLRSQNQCNDKWDNLMRDYKKVRDYERKIAETGERNGSYW 107 ***********96666655422233333338899***************************************977766655554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.957	11	83	IPR017877	Myb-like domain
Pfam	PF13837	2.3E-11	18	96	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MMADQGGKSL IREYKKGNWT VSETMVLIEA KRMDDERRMK RSDSAEGRSK PTELRWKWVE 60 DYCWKQECLR SQNQCNDKWD NLMRDYKKVR DYERKIAETG ERNGSYWKLE KNERKERNLP 120 SNMLPQIYEE LVQVVERRGG QQRMLTAAGG SGSNPNTGYV VERPITDVQP SVLPPLLQHQ 180 VSAAPTPALP LPPPRPPPSQ QPQAQPPPPI QFPESFRTVD SDTSEYSDSP AKRRRRGGEG 240 GEGTSGGTAS ASTSQEVGTA ISKSASIIAE AIQACDEREE RRHRDLLSLH ERRLKIEESK 300 TEINRQGISG LVDAINKLAN SILALASHKN QSSGPK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC208485	0.0	AC208485.1 Populus trichocarpa clone JGIACSB253-H05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011001296.1	0.0	PREDICTED: protein enabled homolog isoform X2
TrEMBL	A0A3N7FX93	0.0	A0A3N7FX93_POPTR; Uncharacterized protein
STRING	POPTR_0012s11820.1	1e-180	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6804	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	7e-60	Trihelix family protein