PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG009625.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

CPP

Protein Properties

Length: 919aa MW: 100102 Da PI: 5.9842

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG009625.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	46.7	6.3e-15	496	534	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnC+k+kClk+YC+Cfaag +C+ C C++C+N+ e CCG009625.1 496 CKRCNCRKTKCLKLYCDCFAAGIYCAAICACQGCFNRPE 534 79**********************************876 PP
2	TCR	47.8	2.8e-15	582	620	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k gCnCk+s C+kkYCeC++a++ Cs+ C+Ce+C+N CCG009625.1 582 RHKTGCNCKRSMCVKKYCECYQANVGCSNACRCEGCRNI 620 5899**********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	5.5E-15	494	535	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	33.23	495	622	IPR005172	CRC domain
Pfam	PF03638	3.9E-11	497	532	IPR005172	CRC domain
SMART	SM01114	1.5E-15	582	623	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.1E-10	585	619	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 919 aa Download sequence Send to blast
MDSPKTTTTT TTTTIPATAT TTTTISVTAT TVSLSDSPPV QESPFSNYIS NLSPIKPVNT 60 AHVAHGLLGI NSPPLVFKSP HTASDRQINL LRRFQYPQIS GAETSKINDG SKKSVDGPED 120 MGRSSICLTS SLIVDAQTSD NVNNSEQDQP GSSSGCVDEY LSDPVDADCA DSVNLVNSNV 180 KKSDDALQSS ESNLTNYKIV ESDDINDKGT KGEVSQARPE QDGDDPKEHP TSENKMEKIK 240 EEGSLTKQPS HVCPNFGSDL LVDHASRQQC YTSGAQVAHP HEPIQLVTYN GSEVSQLQRG 300 MSRRCLQFEQ AQQETTKDGT YSPNPAINLF GSISPASSTE LEILDSSQVE LTISSLKEQT 360 MTAMFSANIS GKSPVAVSKP SGIGLHLNSI VNTLPMGSGA SGPIMSHHLV ENKISCSKLS 420 NLVERVSLTA GDRVLQTKAS LATSSTTSES FHNMESFNNL QPPEHQVTPH NKRRFSSEHA 480 GNFEEKKASS TDGDGCKRCN CRKTKCLKLY CDCFAAGIYC AAICACQGCF NRPEYEDTVL 540 ETRQQIESRN PLAFAPKIVQ HVTEFQAIDV EDVDLFTPYS GRHKTGCNCK RSMCVKKYCE 600 CYQANVGCSN ACRCEGCRNI HGRKEEYAMT PEIVSNRANE ESLEGMADEK LEMVANNKFL 660 HAELYDLRSL TPPTPSFEYF SHERDAPKSQ LLPGRYVLSS ESDFSMLPSY AKSVSSPSNS 720 HGNDMLPKTS KTLDIVSHGQ ELDYNITEIT GQFSPQCDEL ADFSDHTPLP NPSSIMMASS 780 ASSKTQDKAN VSQPQVYTGS ARLSSGSSLR WHSSPITPMT RLGETKNQAQ DSDCGLYDIL 840 EDDTPEMLKD SSAPITSVKT SSPNKKRVSP PHSHIQEFRS SSSAGLKSGR GRKFILKSVP 900 SFPPLTPCRD SKDCTQQKY

Sequence ? help Back to Top

Protein Sequence Length: 919 aa Download sequence Send to blast

MDSPKTTTTT TTTTIPATAT TTTTISVTAT TVSLSDSPPV QESPFSNYIS NLSPIKPVNT  60
AHVAHGLLGI NSPPLVFKSP HTASDRQINL LRRFQYPQIS GAETSKINDG SKKSVDGPED  120
MGRSSICLTS SLIVDAQTSD NVNNSEQDQP GSSSGCVDEY LSDPVDADCA DSVNLVNSNV  180
KKSDDALQSS ESNLTNYKIV ESDDINDKGT KGEVSQARPE QDGDDPKEHP TSENKMEKIK  240
EEGSLTKQPS HVCPNFGSDL LVDHASRQQC YTSGAQVAHP HEPIQLVTYN GSEVSQLQRG  300
MSRRCLQFEQ AQQETTKDGT YSPNPAINLF GSISPASSTE LEILDSSQVE LTISSLKEQT  360
MTAMFSANIS GKSPVAVSKP SGIGLHLNSI VNTLPMGSGA SGPIMSHHLV ENKISCSKLS  420
NLVERVSLTA GDRVLQTKAS LATSSTTSES FHNMESFNNL QPPEHQVTPH NKRRFSSEHA  480
GNFEEKKASS TDGDGCKRCN CRKTKCLKLY CDCFAAGIYC AAICACQGCF NRPEYEDTVL  540
ETRQQIESRN PLAFAPKIVQ HVTEFQAIDV EDVDLFTPYS GRHKTGCNCK RSMCVKKYCE  600
CYQANVGCSN ACRCEGCRNI HGRKEEYAMT PEIVSNRANE ESLEGMADEK LEMVANNKFL  660
HAELYDLRSL TPPTPSFEYF SHERDAPKSQ LLPGRYVLSS ESDFSMLPSY AKSVSSPSNS  720
HGNDMLPKTS KTLDIVSHGQ ELDYNITEIT GQFSPQCDEL ADFSDHTPLP NPSSIMMASS  780
ASSKTQDKAN VSQPQVYTGS ARLSSGSSLR WHSSPITPMT RLGETKNQAQ DSDCGLYDIL  840
EDDTPEMLKD SSAPITSVKT SSPNKKRVSP PHSHIQEFRS SSSAGLKSGR GRKFILKSVP  900
SFPPLTPCRD SKDCTQQKY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-16	499	620	14	121	Protein lin-54 homolog
5fd3_B	2e-16	499	620	14	121	Protein lin-54 homolog
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011019786.1	0.0	PREDICTED: CRC domain-containing protein TSO1-like isoform X1
TrEMBL	A0A3N7F4V8	0.0	A0A3N7F4V8_POPTR; Uncharacterized protein
STRING	POPTR_0006s26740.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8565	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	3e-51	Tesmin/TSO1-like CXC domain-containing protein