PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG009371.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 566aa MW: 64690 Da PI: 6.9149

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG009371.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80	3.4e-25	421	491	1	71
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 +W+k+ev aLi++r+++e ++++ lk+plWeevs m++ g++rs+k+Ckekwen+nk+++k +e+ k++ CCG009371.1 421 KWPKDEVEALIQVRSRIEIKFQEPGLKGPLWEEVSFLMSSMGYQRSAKRCKEKWENINKYFRKARESPKRG 491 7*****************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.12	414	478	IPR017877	Myb-like domain
Pfam	PF13837	3.8E-17	420	490	No hit	No description
CDD	cd12203	3.85E-24	420	485	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence Send to blast
MQPSYGLPNI DHHHHQQQQR QQHLMEDDYS CSPSVLPISN LQNLNYPYQP HLHHHLQQQH 60 KHPHQVLLQQ HHQLFYPFQQ QQQVQGQSQD QVNPSLFSVN FKWGRDYEDS GYKKAGALNN 120 QEEAASTTTN TTTFLDGNVH SNPPHPILMP HSWHPREDST TIKEPFWKQL NKQLSGNEEK 180 EINESKTSYF SPLDMEQVVD GSSEGCKNLE SKFPLFNELQ AIYSLAQIAE ANQTGSGSVL 240 TCDNSPTNAG LSIPCNASNG QNVGACGAAN NVIGVDRGSE NSIGEEASLR KCRRRKRKGK 300 LKEKLNYIAG FFENSVKKVM NHQEMLHRKF LEVIEKMDKE RAEREATWRR QEAEKYSREA 360 ISLAHERASA SSREAQIISY IEKITGQSIN LTRMAPPLLQ PEISNEPIKE ITPTKTDSHS 420 KWPKDEVEAL IQVRSRIEIK FQEPGLKGPL WEEVSFLMSS MGYQRSAKRC KEKWENINKY 480 FRKARESPKR GGIEFGTKKQ GYTELFEVFS VRRDYLANVR NPLGVSVISS DMGSSRSEFD 540 GFSDQNTELE EGSSEQDIEA YKDDKQ

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence Send to blast

MQPSYGLPNI DHHHHQQQQR QQHLMEDDYS CSPSVLPISN LQNLNYPYQP HLHHHLQQQH  60
KHPHQVLLQQ HHQLFYPFQQ QQQVQGQSQD QVNPSLFSVN FKWGRDYEDS GYKKAGALNN  120
QEEAASTTTN TTTFLDGNVH SNPPHPILMP HSWHPREDST TIKEPFWKQL NKQLSGNEEK  180
EINESKTSYF SPLDMEQVVD GSSEGCKNLE SKFPLFNELQ AIYSLAQIAE ANQTGSGSVL  240
TCDNSPTNAG LSIPCNASNG QNVGACGAAN NVIGVDRGSE NSIGEEASLR KCRRRKRKGK  300
LKEKLNYIAG FFENSVKKVM NHQEMLHRKF LEVIEKMDKE RAEREATWRR QEAEKYSREA  360
ISLAHERASA SSREAQIISY IEKITGQSIN LTRMAPPLLQ PEISNEPIKE ITPTKTDSHS  420
KWPKDEVEAL IQVRSRIEIK FQEPGLKGPL WEEVSFLMSS MGYQRSAKRC KEKWENINKY  480
FRKARESPKR GGIEFGTKKQ GYTELFEVFS VRRDYLANVR NPLGVSVISS DMGSSRSEFD  540
GFSDQNTELE EGSSEQDIEA YKDDKQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	289	297	RKCRRRKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011019357.1	0.0	PREDICTED: trihelix transcription factor GTL1-like
TrEMBL	B9HD13	0.0	B9HD13_POPTR; Uncharacterized protein
STRING	POPTR_0006s23800.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13998	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	7e-37	Trihelix family protein