PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008822.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 351aa    MW: 38667.9 Da    PI: 10.2998
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008822.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.11.5e-1553136186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  v +L+ea+++++   +r+klk+++We+v++++      ++  ++++qCk+k+e+++kry+ + +++        s++p++ +l+
  CCG008822.1  53 EWSEGAVSTLLEAYESKWILRNRAKLKGHDWEDVARHVssraNCTKSPKTQTQCKNKIESMKKRYRSESATADA------SSWPLYPRLD 136
                  5*************************************854444555566679***************999986......4699999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.8E-2051136No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDKETNQECP SLRPNNSTTI KEESPRKIPR GPGVIVTGGG GGGGGGDRLK RDEWSEGAVS  60
TLLEAYESKW ILRNRAKLKG HDWEDVARHV SSRANCTKSP KTQTQCKNKI ESMKKRYRSE  120
SATADASSWP LYPRLDLLLR GNSAAAAVIS SPQHQQPSIP ASSNPPLILL VEPTLGVPQP  180
PPPSMTPTPP PPPAPPPPPQ VIVIGQNSHG SNGVDHRGQK EDGVDTKLSN HVSDKNAMDV  240
TDSSTPAMYS DKKKTRSKKL KMRKEKRKWG KREEWEIADS IRWLAEVVVR SEQARMDTMR  300
EVEKMRIEAE AKRGEMDLKR TEIIANTQLE IAKLFAGGGK GVDSSLRIGR N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251267KKKTRSKKLKMRKEKRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2255730.0CU225573.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000583.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLB9GLZ40.0B9GLZ4_POPTR; Uncharacterized protein
STRINGPOPTR_0001s06580.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-99sequence-specific DNA binding transcription factors