PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008800.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 368aa    MW: 40884.1 Da    PI: 6.8066
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008800.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.72e-1574161186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  + +Li+a  e+  +l+rg+lk+++W++v++ + +++ +++s+k   qCk++++ ++k+yk +k+ + ++  + +s++p+fd l+
  CCG008800.1  74 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKDVAEIVsSREDYSKSAKtdiQCKNRIDTVKKKYKLEKAKMASG--GGVSSWPFFDPLD 161
                  7*************************************867778877754449********************97..67779*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.3E-2572163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDDDDDIQSH SNTTESSSPS PSPPPPNGRI TVTVPATATV PPPPPPQQTD NSLALVLPTK  60
SKANGSGGGG REDCWSEGAT AVLIDAWGER YLELSRGNLK QKHWKDVAEI VSSREDYSKS  120
AKTDIQCKNR IDTVKKKYKL EKAKMASGGG VSSWPFFDPL DRLIGSTARV PAVGSGSKFP  180
FAIPVRVRSS SRRGGTNQYH FRRNQNMKAR KWGKDDDDDD EEEEEEEEEE EEEEEDGSFP  240
PQKKRRVVVE REAGGKGGGG KEKKGGWGNS IRMLTQAMLK FGEAYEQAET AKLQQVVEME  300
KTRMKFSKEL ELQRMQFFMQ TQMEISQLKN GRKGGNASGN HHHHHHHHHT GNNNITASNN  360
VNNSDSDN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253259GGKGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461013.11e-175trihelix transcription factor ASIL2
SwissprotQ9LJG83e-91ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2K2B9V51e-136A0A2K2B9V5_POPTR; Uncharacterized protein
STRINGPOPTR_0001s06330.11e-150(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-55sequence-specific DNA binding transcription factors