PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG008735.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 447aa MW: 51311.9 Da PI: 6.6034

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG008735.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.9	2.1e-26	121	217	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt+++v++Li+a+++++e+ +++ +kk++W+++sk+m+ergf++sp+qC++k+++lnkryk+++++ +++ +++++++ +++d + CCG008735.1 121 KWTDKMVRLLITAVSYIGEDGTSDCgggmrrkftvlQKKGKWKSISKVMAERGFHVSPQQCEDKFNDLNKRYKRLNDMLGRGtSCQVVENPALLDVI 217 7*******************99888999999999********************************************569999888887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.6E-23	119	244	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MEGNLSQGGM VPGGAPFGGL DLQGSMRVHH QAQHPHTMHH HHHHLHRQGS STLTSVEEGF 60 PLTMGFMHNS DQNISMTDYN KGDRGKNSVS DEDEPSYTEE GADGHNDAIT GKKGTPWQRV 120 KWTDKMVRLL ITAVSYIGED GTSDCGGGMR RKFTVLQKKG KWKSISKVMA ERGFHVSPQQ 180 CEDKFNDLNK RYKRLNDMLG RGTSCQVVEN PALLDVIDYL TEKEKDDVRK ILNSKHLFYE 240 EMCSYHNGNR LHLPHDPALQ RSLQLALRSR DDHDNDDARR HQHDDLDEDD QEIETDDHDE 300 FEDNHASHGD CRGIHGVLGG SAKRPRQGQG HEDACFGNSS REPNKGSSSY HPLAAQVDVN 360 QVSSESARAV WLQKQWMESR TLQLEERKLQ IQQEMLELEK QRFKWQRFSK KRDRELEKLR 420 MENERMKLEN DQMALELKRK EMGADFN

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MEGNLSQGGM VPGGAPFGGL DLQGSMRVHH QAQHPHTMHH HHHHLHRQGS STLTSVEEGF  60
PLTMGFMHNS DQNISMTDYN KGDRGKNSVS DEDEPSYTEE GADGHNDAIT GKKGTPWQRV  120
KWTDKMVRLL ITAVSYIGED GTSDCGGGMR RKFTVLQKKG KWKSISKVMA ERGFHVSPQQ  180
CEDKFNDLNK RYKRLNDMLG RGTSCQVVEN PALLDVIDYL TEKEKDDVRK ILNSKHLFYE  240
EMCSYHNGNR LHLPHDPALQ RSLQLALRSR DDHDNDDARR HQHDDLDEDD QEIETDDHDE  300
FEDNHASHGD CRGIHGVLGG SAKRPRQGQG HEDACFGNSS REPNKGSSSY HPLAAQVDVN  360
QVSSESARAV WLQKQWMESR TLQLEERKLQ IQQEMLELEK QRFKWQRFSK KRDRELEKLR  420
MENERMKLEN DQMALELKRK EMGADFN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011042849.1	0.0	PREDICTED: uncharacterized protein LOC105138468
TrEMBL	A0A2K2BEQ0	0.0	A0A2K2BEQ0_POPTR; Uncharacterized protein
STRING	POPTR_0002s06930.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5001	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-159	sequence-specific DNA binding transcription factors