PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008193.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 280aa    MW: 30697.1 Da    PI: 9.7911
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008193.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.7e-097396125
                 --S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaH 25
                 +kt lC+ f+  G+C++G++C FaH
  CCG008193.1 73 FKTQLCMKFRT-GHCSHGSKCLFAH 96
                 69*********.************* PP
2zf-CCCH19.71.5e-06118140426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                   lCr f  +  C yG++C+F H+
  CCG008193.1 118 NLCRMFNSGKGCTYGNKCRFLHV 140
                  6999999999************5 PP
3zf-CCCH39.11.2e-12176202127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +kt+lC+++  tG C+yG  C+FaHg+
  CCG008193.1 176 KKTRLCNNWEMTGGCPYGKVCHFAHGR 202
                  59***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.5E-1172103IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-77298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-672102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8267299IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-67396IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.986114142IPR000571Zinc finger, CCCH-type
SMARTSM003560.022115141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5116142IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-5117140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-6119139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-14172206IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-9175206IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.648175203IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5175202IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-9176202IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSDSAPSCKY FTFSTQMVHS GSQCSTQTKG FGIVSNIGDP LRKKPRICEN NAGPSSKMLV  60
GKSNAMMTSG GSFKTQLCMK FRTGHCSHGS KCLFAHAVCD LRKALPNLRR VVFNEDKNLC  120
RMFNSGKGCT YGNKCRFLHV GPENFQKNLG QNWESSAISI GTTGTASSGG HKKGFKKTRL  180
CNNWEMTGGC PYGKVCHFAH GRQELEKSDG NIALASGIVP TKASNSLLMG KDDIGSNHKH  240
EAQATHCMFK WKALKKTRGI YADWIEDMHL LHSSLNEVES
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040025.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
TrEMBLA0A2K2B2B90.0A0A2K2B2B9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s06010.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1880666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-28C3H family protein