PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG008130.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 564aa MW: 63997.4 Da PI: 7.2277

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG008130.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	289.1	1.2e-88	184	549	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl.fsevsPilkfshltaN 99 lLl+ Ae v ++++ +a++lL+r + as++ +p+qR++ f+eAL++r+++ ++ + k ++ +++ e+ + +++ +l +++ Pi ++ +lta CCG008130.1 184 LLLATAEKVGDQQFDRASRLLSRCEMVASERSNPLQRVVYSFAEALQERIHKaTGRFIPKEMKGKPNCETPHGLSTHLAHLsLHQNVPINQVMQLTAI 281 899***********************************************77778888887777766554444444444499********** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 qaI e v +++++H iD++i G+QW aL+qaLa+R++ +l+iT+vg +++eetg+rL+ fA+ ++ pf f+++ ++ +++++ e +++ CCG008130.1 282 QAIIENVGSARKIHLIDLEIRSGVQWTALMQALADRQRRLDHLKITAVGL---RGIQKIEETGKRLEIFARYMNFPFTFKPIQVSCMSEIKEELFETA 376 *********************************************9...5799************************************* PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 +Ea++V + l ++l+++++le+ +++++k+l+P +++v e ea+hns++F++rf+eal +ysa fd+l++ l +++e+r+ E+ +++ i+ CCG008130.1 377 ADEAIVVVANMILRTMLSRPACLEN----LMRVIKNLNPSIMIVGEVEANHNSPTFVNRFIEALFFYSAYFDCLDTCLKQNTEHRTITEAT-FSNGIE 469 *******************99....*********************************************8888888888888.** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 n+v++eg++r++r ++ Wr+ ++++ + +v ++++ qa l+ ++++ + ++e++ ++l+lgWk+ pL s+SaW+ CCG008130.1 470 NIVTMEGTDRIARSVKMDVWRAFFSRFRMVEVGFGDSSLYQAGLIPKQFPcGSLCTIEKNGKCLILGWKGTPLHSLSAWK 549 **********************************************9999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.254	155	528	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.2E-86	184	549	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence Send to blast
MIEGEKGRLF SMEDLGQVYP LCSEYCSYQD NTENKGLNFF RDQQQPQQQQ SPSKSSYLTL 60 DDFLGSCFPA PAQPMQEIKR LESIAKNSKE TLYTPALSSS LQLLRKYGSG KEIECNQLGG 120 ASDETCFSTR KKLSTEEIIR VAGSSFIQFS DQRYDDFFML MHPVGYALSG LSEEETRDVE 180 LTLLLLATAE KVGDQQFDRA SRLLSRCEMV ASERSNPLQR VVYSFAEALQ ERIHKATGRF 240 IPKEMKGKPN CETPHGLSTH LAHLSLHQNV PINQVMQLTA IQAIIENVGS ARKIHLIDLE 300 IRSGVQWTAL MQALADRQRR LDHLKITAVG LRGIQKIEET GKRLEIFARY MNFPFTFKPI 360 QVSCMSEIKE ELFETAADEA IVVVANMILR TMLSRPACLE NLMRVIKNLN PSIMIVGEVE 420 ANHNSPTFVN RFIEALFFYS AYFDCLDTCL KQNTEHRTIT EATFSNGIEN IVTMEGTDRI 480 ARSVKMDVWR AFFSRFRMVE VGFGDSSLYQ AGLIPKQFPC GSLCTIEKNG KCLILGWKGT 540 PLHSLSAWKF SRERLWSSLA NYKF

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence Send to blast

MIEGEKGRLF SMEDLGQVYP LCSEYCSYQD NTENKGLNFF RDQQQPQQQQ SPSKSSYLTL  60
DDFLGSCFPA PAQPMQEIKR LESIAKNSKE TLYTPALSSS LQLLRKYGSG KEIECNQLGG  120
ASDETCFSTR KKLSTEEIIR VAGSSFIQFS DQRYDDFFML MHPVGYALSG LSEEETRDVE  180
LTLLLLATAE KVGDQQFDRA SRLLSRCEMV ASERSNPLQR VVYSFAEALQ ERIHKATGRF  240
IPKEMKGKPN CETPHGLSTH LAHLSLHQNV PINQVMQLTA IQAIIENVGS ARKIHLIDLE  300
IRSGVQWTAL MQALADRQRR LDHLKITAVG LRGIQKIEET GKRLEIFARY MNFPFTFKPI  360
QVSCMSEIKE ELFETAADEA IVVVANMILR TMLSRPACLE NLMRVIKNLN PSIMIVGEVE  420
ANHNSPTFVN RFIEALFFYS AYFDCLDTCL KQNTEHRTIT EATFSNGIEN IVTMEGTDRI  480
ARSVKMDVWR AFFSRFRMVE VGFGDSSLYQ AGLIPKQFPC GSLCTIEKNG KCLILGWKGT  540
PLHSLSAWKF SRERLWSSLA NYKF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-36	204	549	26	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002302768.3	0.0	DELLA protein RGL2
TrEMBL	A0A2K2BLG6	0.0	A0A2K2BLG6_POPTR; Uncharacterized protein
STRING	POPTR_0002s19660.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	2e-56	RGA-like 2