PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG007777.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 86aa MW: 9871.67 Da PI: 10.3968 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.6 | 4.9e-07 | 5 | 37 | 1 | 34 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkg 34 +g WT e d++l+ +++ +G +W++ ++ g + CCG007777.1 5 KGQWTLEADQILISYIQNYGHSNWRALSKQAG-T 37 799**************************999.5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.737 | 1 | 47 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.66E-7 | 1 | 45 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.8E-10 | 4 | 37 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.9E-6 | 5 | 39 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00112 | 8 | 37 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MRLTKGQWTL EADQILISYI QNYGHSNWRA LSKQAGTITE MREELQVPMD KLFAARVGFT 60 LAAKLKRSYI LSLPLPKILN LPKLIE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 1e-12 | myb domain protein 15 |