PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG007683.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 447aa    MW: 48440.7 Da    PI: 8.5079
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG007683.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH352.4e-115782227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 +++ C+++ rtG C++G++C+F+H+p
  CCG007683.1 57 GEPDCSYYIRTGLCRFGATCRFNHPP 82
                 6899********************97 PP
2zf-CCCH38.81.6e-12103127327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++C+++++tGtCk+G++CkF+H++
  CCG007683.1 103 QPECQYYLKTGTCKFGATCKFHHPR 127
                  799********************96 PP
3zf-CCCH36.96.2e-12151173527
                  --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                  +C +++rtG+Ck+G++CkF+H++
  CCG007683.1 151 ECAYYLRTGQCKFGSTCKFHHPQ 173
                  7********************97 PP
4zf-CCCH37.93.1e-12308334127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+f+++tG Ck+G+ C+F+H++
  CCG007683.1 308 PGQPECQFYMKTGDCKFGAVCRFHHPR 334
                  5789*********************96 PP
5zf-CCCH40.16e-13354380127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++lC f++r+G+Ck+G++CkF H++
  CCG007683.1 354 PGEPLCIFYSRYGICKFGPSCKFDHPM 380
                  589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.235583IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-55582IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-85782IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-56083IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-46181IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-6100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.159100128IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10103127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6104129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-5106127IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-5146173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.065146174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6150174IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9151173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4152172IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6307334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596307335IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-9309334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5311337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-5313335IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7353380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709353381IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10355380IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5356380IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-4358378IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MDFDAGIPMS RSGGGGGLPA VTEGTSMSQS LSEDAMWQMN LRSSETMEAG PYPERSGEPD  60
CSYYIRTGLC RFGATCRFNH PPNRKLAIAA ARMKGEFPER IGQPECQYYL KTGTCKFGAT  120
CKFHHPRDKA GISGRVSLNI LGYPLQPNEI ECAYYLRTGQ CKFGSTCKFH HPQPTNMMVP  180
LRGSPIYPTV SSPTTPGQQS YPGGLATTWS RASFITSPRW QAPSSYTPLI LPQGVVSVPG  240
WNAYSGQLGS VSSPENQQQT GNSQIYGTSR HSESVNAGSQ GTFSPYRSGS APLGYYALQR  300
ESVFPERPGQ PECQFYMKTG DCKFGAVCRF HHPRERLIPA PDCVLSPIGL PLRPGEPLCI  360
FYSRYGICKF GPSCKFDHPM GIFTYNLTAS SSADAPVRRL LGSSSGSAGL TLSSEGLVEA  420
GPTKPRRLSL SEPRQMPPGD DNIDTGG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2263381e-148CU226338.1 Populus EST from severe drought-stressed leaves.
GenBankCU2268051e-148CU226805.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014133.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2K1Y3460.0A0A2K1Y346_POPTR; Uncharacterized protein
STRINGXP_002512627.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1