PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG007478.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Dof | ||||||||
Protein Properties | Length: 301aa MW: 34089.8 Da PI: 4.464 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 116.2 | 1.4e-36 | 28 | 87 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+a +cprC s ntkfCyynnyslsqPryfCk+CrryWtkGG++rnvPvGgg+rk ++++ CCG007478.1 28 EAAPNCPRCASPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSIRNVPVGGGCRKYRRAK 87 56779**************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-28 | 20 | 85 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.7E-31 | 30 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.987 | 31 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 33 | 69 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MYSATDQMMF QCPPRPFPKE KKWKSKVEAA PNCPRCASPN TKFCYYNNYS LSQPRYFCKG 60 CRRYWTKGGS IRNVPVGGGC RKYRRAKSSK VSQNERAAVS VNYSRTNETT LACSANKDSM 120 AQQGEANGSD IDLAVVFAKF LNQDLSYEPD FTGEDLLNEG GDQMVDVSNS SNPSDSFQND 180 TMMESLKRSD LIQESNFLEG QSQVLVGEKQ RLEEERIQEL IESQDMNAFG LQDLLSDEIV 240 QDALWSDDAT LPNFPNWQPM LQLQDFDSFS VDDRLKISSN FISDNNWSSL DLAGFEVFSR 300 P |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 183 | 188 | ESLKRS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU222746 | 1e-146 | CU222746.1 Populus EST from leave. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010999807.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.2-like | ||||
TrEMBL | A0A2K2AIV2 | 0.0 | A0A2K2AIV2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s21130.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1817 | 33 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21340.1 | 6e-41 | Dof family protein |