PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG006851.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 366aa MW: 40597.8 Da PI: 7.1732

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG006851.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.7	2e-15	74	161	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W++v++ + +++ +++s+k qCk++++ ++k+yk +k+ + ++ + +s++p+fd l+ CCG006851.1 74 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKDVAEIVsSREDYSKSAKtdiQCKNRIDTVKKKYKLEKAKMASG--GGVSSWPFFDPLD 161 7***********************************867778877754449****************97..67779***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.2E-25	72	163	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MDDDDDIQSH SNTTESSSPS PSPPPPNGRI TVTVPATATV PPPPPPQQTD NSLALVLPTK 60 SKANGSGGGG REDCWSEGAT AVLIDAWGER YLELSRGNLK QKHWKDVAEI VSSREDYSKS 120 AKTDIQCKNR IDTVKKKYKL EKAKMASGGG VSSWPFFDPL DRLIGSTARV PAVGSGSKFP 180 FAIPVRVRSS SRRGGTNQYH FRRNQNMKAR KWGKDDDDDD DDEEEEEEEE EEEDGSFPPQ 240 KKRRVVVERE AGGKGGGGKE KKGGWGNSIR MLTQAMLKFG EAYEQAETAK LQQVVEMEKT 300 RMKFSKELEL QRMQFFMQTQ MEISQLKNGR KGGNASGNHH HHHHHHHTGN NNITASNNVN 360 NSDSDN

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MDDDDDIQSH SNTTESSSPS PSPPPPNGRI TVTVPATATV PPPPPPQQTD NSLALVLPTK  60
SKANGSGGGG REDCWSEGAT AVLIDAWGER YLELSRGNLK QKHWKDVAEI VSSREDYSKS  120
AKTDIQCKNR IDTVKKKYKL EKAKMASGGG VSSWPFFDPL DRLIGSTARV PAVGSGSKFP  180
FAIPVRVRSS SRRGGTNQYH FRRNQNMKAR KWGKDDDDDD DDEEEEEEEE EEEDGSFPPQ  240
KKRRVVVERE AGGKGGGGKE KKGGWGNSIR MLTQAMLKFG EAYEQAETAK LQQVVEMEKT  300
RMKFSKELEL QRMQFFMQTQ MEISQLKNGR KGGNASGNHH HHHHHHHTGN NNITASNNVN  360
NSDSDN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	251	257	GGKGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024461013.1	1e-174	trihelix transcription factor ASIL2
Swissprot	Q9LJG8	3e-92	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A2K2B9V5	1e-138	A0A2K2B9V5_POPTR; Uncharacterized protein
STRING	POPTR_0001s06330.1	1e-150	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7919	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	2e-55	sequence-specific DNA binding transcription factors