PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG006552.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 247aa MW: 28060.2 Da PI: 10.2059

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG006552.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	122.2	4.4e-38	14	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...tksgyWkatgkdkevlsk 95 lp G+rFhPtdeelvv+yLk+kv g +l++ vi+e+d+++++Pw+Lp ++ +++ yfFs+++ + g++ +r+ + sgyWk gk k+++++ CCG006552.1 14 LPIGYRFHPTDEELVVHYLKRKVLGLPLPA-AVIPEFDVFQTDPWSLPGNL---KEKRYFFSQKKLND-FGTKCKRSagsVPSGYWKPVGKGKQIVAS 106 699*************************.89***********544...45789987765.4666666412256**********999 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg++ktLvf + ++++ ++t+Wvmhey l CCG006552.1 107 gSNQAVGIRKTLVFRERNHSSKTRTQWVMHEYCL 140 66778******9999999********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-42	11	165	IPR003441	NAC domain
PROSITE profile	PS51005	42.84	14	165	IPR003441	NAC domain
Pfam	PF02365	4.4E-24	15	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MERPNFVENG GLKLPIGYRF HPTDEELVVH YLKRKVLGLP LPAAVIPEFD VFQTDPWSLP 60 GNLKEKRYFF SQKKLNDFGT KCKRSAGSVP SGYWKPVGKG KQIVASGSNQ AVGIRKTLVF 120 RERNHSSKTR TQWVMHEYCL VGLPTDPKTT QMKVGDWVAI SIFHRKRKPK KNHVVMISNP 180 SNINKRQNVE IISPSFMDFM MEQSSDEAGA PSQCSSGVTE VSSNEFDQEE ISSFISLFSY 240 PCKRKRT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-28	12	171	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-28	12	171	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-28	12	171	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-28	12	171	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-28	12	171	18	174	NAC domain-containing protein 19
3swm_B	4e-28	12	171	18	174	NAC domain-containing protein 19
3swm_C	4e-28	12	171	18	174	NAC domain-containing protein 19
3swm_D	4e-28	12	171	18	174	NAC domain-containing protein 19
3swp_A	4e-28	12	171	18	174	NAC domain-containing protein 19
3swp_B	4e-28	12	171	18	174	NAC domain-containing protein 19
3swp_C	4e-28	12	171	18	174	NAC domain-containing protein 19
3swp_D	4e-28	12	171	18	174	NAC domain-containing protein 19
4dul_A	4e-28	12	171	15	171	NAC domain-containing protein 19
4dul_B	4e-28	12	171	15	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP769996	0.0	KP769996.1 Populus tomentosa NAC domain transcription factor (Potri.017G063300) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011013869.1	0.0	PREDICTED: NAC domain-containing protein 68-like
Refseq	XP_011045764.1	0.0	PREDICTED: NAC domain-containing protein 68
TrEMBL	B9GF72	1e-179	B9GF72_POPTR; NAC family protein
STRING	POPTR_0001s33260.1	1e-180	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF704	34	139

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	3e-51	NAC domain containing protein 83