PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006050.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 452aa    MW: 48989.8 Da    PI: 7.4994
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006050.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74.1e-08130150526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C ++ + G+C++Gd+C+F H+
  CCG006050.1 130 VCTYWVQ-GHCNRGDTCRFLHS 150
                  7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.1553763IPR000571Zinc finger, CCCH-type
SMARTSM003560.573962IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155125152IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-5125151IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-7128150IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-6129150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-6129150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.101.5E-16151261IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.9E-5156195IPR001680WD40 repeat
SuperFamilySSF509781.77E-46157443IPR017986WD40-repeat-containing domain
PfamPF004002.9E-4159195IPR001680WD40 repeat
PROSITE profilePS5008213.817163204IPR001680WD40 repeat
PROSITE profilePS5029421.331163365IPR017986WD40-repeat-containing domain
PRINTSPR003203.7E-6182196IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780182196IPR019775WD40 repeat, conserved site
SMARTSM003201.9235272IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.102.5E-31262443IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.0074279316IPR001680WD40 repeat
PROSITE profilePS5008211.31286325IPR001680WD40 repeat
PRINTSPR003203.7E-6303317IPR020472G-protein beta WD-40 repeat
SMARTSM003202.9E-4319356IPR001680WD40 repeat
PfamPF004000.016321355IPR001680WD40 repeat
PRINTSPR003203.7E-6343357IPR020472G-protein beta WD-40 repeat
SMARTSM0032044360403IPR001680WD40 repeat
SMARTSM003204.1406443IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MDFDYNGGNT TNTNKRVFNR LGGGQSANDT SNHNHLQQNQ KVCYHWRAGR CNRFPCPFLH  60
RELSAPPTHA AVNGGVGAKR GFVGNDSSSS SSFSGRRGNN GNNSNYNNSW GRFGNKGDGR  120
GVRGGSVEKV CTYWVQGHCN RGDTCRFLHS WSLGDGFSLL TQLEGHQKVI SGIALPSGSD  180
KLYTGSKDET VRVWDCQSGQ CMGVINLGGE VGCMISEGPW IFVGTPNVVK AWNTQTNTDL  240
SLTGPVGQVY ALVVGNDLLF AGTQDGSILV WKFNAATYNF EPAASLNDHK MAVVSLVVGA  300
NRLYSGSMDH SIKVWSLETL QCVQTLKDHT SVVMSLLCWE QFLLSCSLDQ TIKVWAATES  360
GNLEVSYTHK EEHGLLTLCG MHDLEGKPIL LCSSNDSSVH LFDLPSFSEK GKIFAKQEIR  420
AIQTGPGGLF FTGDGTGQVR VWNSVAVPTA TT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-211514435323Tako8
6g6n_A2e-211514435323Tako8
6g6n_B2e-211514435323Tako8
6g6n_C2e-211514435323Tako8
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041626.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLB9ID210.0B9ID21_POPTR; Uncharacterized protein
STRINGPOPTR_0015s13760.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1