PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005923.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 121aa    MW: 13460.8 Da    PI: 11.1158
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005923.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.41.9e-1115911487
                 T-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3 14 grlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87
                 +rl++  +f++      gg     ++    d sgr+W +++++rkk+    v +kGW  Fv+++gLk+gD v F+ +++
  CCG005923.1 15 KRLSVKARFLSPLpcfnGGG--HAVDFEAVDGSGRVWALRCSIRKKGHPkPVTSKGWLAFVHSKGLKAGDRVRFSKEKN 91
                 45777777775557665444..3456777899*********88666555699**********************95554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.17E-13392No hitNo description
Gene3DG3DSA:2.40.330.102.5E-15492IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-11492IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-81792IPR003340B3 DNA binding domain
PROSITE profilePS508638.68443106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MARFSKVLRK TDIKKRLSVK ARFLSPLPCF NGGGHAVDFE AVDGSGRVWA LRCSIRKKGH  60
PKPVTSKGWL AFVHSKGLKA GDRVRFSKEK NDAGAKTHAY EIRTEKEMKI FGAVFGYAPI  120
I
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134281e-116AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006364.13e-68PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A3N7FZQ52e-67A0A3N7FZQ5_POPTR; Uncharacterized protein
STRINGPOPTR_0015s01750.18e-71(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.12e-06ethylene response DNA binding factor 3