PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005670.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 295aa    MW: 33346.6 Da    PI: 9.1342
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005670.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.3e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W + Ed++l  ++k +G g W+  +++ g++R++k+c++rw++yl
      CCG005670.1 14 RGAWAALEDKILMAYIKAHGEGKWRNLPERAGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding50.64.5e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ 
      CCG005670.1  67 RGNISHDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111
                      78999*****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-22564IPR009057Homeodomain-like
PROSITE profilePS5129414.507961IPR017930Myb domain
SuperFamilySSF466891.52E-2612108IPR009057Homeodomain-like
SMARTSM007174.1E-101363IPR001005SANT/Myb domain
PfamPF002498.0E-121461IPR001005SANT/Myb domain
CDDcd001674.30E-71661No hitNo description
PROSITE profilePS5129424.25862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2365115IPR009057Homeodomain-like
SMARTSM007176.1E-1566114IPR001005SANT/Myb domain
PfamPF002492.0E-1467112IPR001005SANT/Myb domain
CDDcd001674.16E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006633Biological Processfatty acid biosynthetic process
GO:0006970Biological Processresponse to osmotic stress
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGRSPCCSKE GLNRGAWAAL EDKILMAYIK AHGEGKWRNL PERAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SHDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT NLGKKAKGQS  120
SSQSKQRSQS KSRAIKPLTS TQPSKSTQTT QVIRTKATRC TKVLFSLQSP PSTQTPLLPP  180
EILSSTAMND PSQASLINHQ QDGPDFHCGT EEVHAWHDGS DFFNFGKWNE IQPNDTDGDT  240
LMKSGCNRNL SRGSEYSLGL FDDLMQKDWA LNHCPEDNAT LDLINDFFIN KYVCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-221211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5731520.0FJ573152.1 Populus tremuloides MYB transcription factor R2R3-like protein (MYB086) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013625.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A2K1WW120.0A0A2K1WW12_POPTR; Uncharacterized protein
TrEMBLC5HYE70.0C5HYE7_POPTM; MYB transcription factor R2R3-like protein (Fragment)
STRINGPOPTR_0018s05530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.13e-60myb domain protein 7