PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005274.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 792aa    MW: 93523.6 Da    PI: 7.1392
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005274.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.31.9e-06215234625
                  -SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                  C+f+++tG C++G rC++ H
  CCG005274.1 215 CPFHLKTGACRFGQRCSRVH 234
                  ******************99 PP
2zf-CCCH27.94.1e-09344371126
                  --S---SGGGGTS..--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                  +k ++C  f+++   tC++G+ C+F+H+
  CCG005274.1 344 WKVAICGEFMKSRlkTCSHGSACNFIHC 371
                  899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.23209237IPR000571Zinc finger, CCCH-type
SMARTSM003563.4210236IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4214234IPR000571Zinc finger, CCCH-type
PRINTSPR018487.0E-36215234IPR009145U2 auxiliary factor small subunit
PRINTSPR018487.0E-36234254IPR009145U2 auxiliary factor small subunit
PROSITE profilePS501029.337241341IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3305.2E-25241339IPR012677Nucleotide-binding alpha-beta plait domain
CDDcd125407.00E-47242340No hitNo description
SMARTSM003611.1E-5265337IPR003954RNA recognition motif domain, eukaryote
PRINTSPR018487.0E-36270285IPR009145U2 auxiliary factor small subunit
SuperFamilySSF549281.02E-15272341IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018487.0E-36298320IPR009145U2 auxiliary factor small subunit
PRINTSPR018487.0E-36325349IPR009145U2 auxiliary factor small subunit
SMARTSM003560.051343372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311343373IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-7344371IPR000571Zinc finger, CCCH-type
PRINTSPR018487.0E-36363375IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MTSKEEEEEE EEKTAMRRKA KRKEKKKLKR KQARREIAEK EREGEERRLN DPEEQRRLKE  60
MEEEEKERME RERKAFEERE RQWMEVMERK RKEEEERRKV LEEKEEEVNA LLQDGKENGC  120
DEDDDWEYIE EGPAEIIWQE NEIIVRKKKV RVPKKIADRQ GTKEDVDRPT SNPLPPQSEA  180
FTEYQNASAV SAQQMLENVA QQVPKFGTEQ DKAHCPFHLK TGACRFGQRC SRVHFYPDKA  240
CTLLIKNMYN GPGLAWEQDE GLEYTDEEVE CSYEEFYEDV HTEFLKYGEI VNFKVCKNGS  300
FHLRGNVYVH YKLLDSAILA YHSINGRYFA GKQVKCEFIN LTRWKVAICG EFMKSRLKTC  360
SHGSACNFIH CFRNPGGDYE WADWDRPPPR FWVKKMASLF GYSAESSYEK QTVEEKLRQT  420
RMSSNMLTAD RDRHDRMRRS RSRDMDRAIH SSHKSGDIED DFPEVTHWTS HSKDDGCNSD  480
GRQSDRDTER ERDRDRDRER YRHHYHARKR SKHHSKVSER STDYGENNSR SHEIDQNELS  540
DDGRNRHKHF GSTKSSGRRT FIDDDKDSKD EARRMYGYRL DRDINREKSR HRTGKSSRHQ  600
SRVRSPDDHG DGESRTFDSG SSREGSPRDR DRHHHHISKS LGDQKNVLEF PDNHWDNGPR  660
TYSTNSSTDL LDRDSVRHFG RGRKRLEQSE PELSDDEGAS VKRLKDKSLV GKSDIRKSHL  720
QRNPTGGHST RRNYSSKETV DVNSPVETHK LDGNHVYGQV KQCSGRWESN SPGSRYNFSE  780
EIDEQDRWEP ES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A1e-302063709167Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11622RRKAKRK
21630RRKAKRKEKKKLKRK
32129RKEKKKLKR
42431KKKLKRKQ
5491501RDRDRDRERYR
6682704RKRLEQSEPELSDDEGASVKRLK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028398.10.0PREDICTED: zinc finger CCCH domain-containing protein 5
SwissprotQ9SY740.0C3H5_ARATH; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A3N7EV750.0A0A3N7EV75_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23740.10.0(Populus trichocarpa)
STRINGXP_002527847.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47132433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-152C3H family protein
Publications ? help Back to Top
  1. Lorković ZJ,Wieczorek Kirk DA,Lambermon MH,Filipowicz W
    Pre-mRNA splicing in higher plants.
    Trends Plant Sci., 2000. 5(4): p. 160-7
    [PMID:10740297]
  2. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]